Cluster: HRGMv2_3650_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3650_18 | HRGMv2_3650_18_58 | 55407 | 57002 | - | CBM91 | GH43_11 |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_59 | 57027 | 57866 | - | 3.A.1.1.34 |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_60 | 57882 | 58841 | - | 3.A.1.1.4 |
| STP | HRGMv2_3650_18 | HRGMv2_3650_18_61 | 58931 | 60235 | - | SBP_bac_1 |
| CAZyme | HRGMv2_3650_18 | HRGMv2_3650_18_62 | 60518 | 62944 | + | GH94 |
| STP | HRGMv2_3650_18 | HRGMv2_3650_18_63 | 63039 | 63725 | + | Pribosyltran |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_64 | 63726 | 64568 | + | 3.A.1.14.19 |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_65 | 64577 | 65545 | + | 3.A.1.14.9 |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_66 | 65533 | 66303 | + | 3.A.1.13.2 |
| pfam | HRGMv2_3650_18 | HRGMv2_3650_18_67 | 66348 | 67094 | + | PseudoU_synth_2 |
| pfam | HRGMv2_3650_18 | HRGMv2_3650_18_68 | 67166 | 67816 | + | Cytidylate_kin2 |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_69 | 67811 | 69076 | - | 9.A.40.2.4 |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_70 | 69073 | 70347 | - | 9.A.40.2.1 |
Gene ID: HRGMv2_3650_18_58
Type: CAZyme
Location: 55407 - 57002 (-)
Type: CAZyme
Location: 55407 - 57002 (-)
Gene ID: HRGMv2_3650_18_59
Type: TC
Location: 57027 - 57866 (-)
Type: TC
Location: 57027 - 57866 (-)
Gene ID: HRGMv2_3650_18_60
Type: TC
Location: 57882 - 58841 (-)
Type: TC
Location: 57882 - 58841 (-)
Gene ID: HRGMv2_3650_18_61
Type: STP
Location: 58931 - 60235 (-)
Type: STP
Location: 58931 - 60235 (-)
Gene ID: HRGMv2_3650_18_62
Type: CAZyme
Location: 60518 - 62944 (+)
Type: CAZyme
Location: 60518 - 62944 (+)
Gene ID: HRGMv2_3650_18_63
Type: STP
Location: 63039 - 63725 (+)
Type: STP
Location: 63039 - 63725 (+)
Gene ID: HRGMv2_3650_18_64
Type: TC
Location: 63726 - 64568 (+)
Type: TC
Location: 63726 - 64568 (+)
Gene ID: HRGMv2_3650_18_65
Type: TC
Location: 64577 - 65545 (+)
Type: TC
Location: 64577 - 65545 (+)
Gene ID: HRGMv2_3650_18_66
Type: TC
Location: 65533 - 66303 (+)
Type: TC
Location: 65533 - 66303 (+)
Gene ID: HRGMv2_3650_18_67
Type: pfam
Location: 66348 - 67094 (+)
Type: pfam
Location: 66348 - 67094 (+)
Gene ID: HRGMv2_3650_18_68
Type: pfam
Location: 67166 - 67816 (+)
Type: pfam
Location: 67166 - 67816 (+)
Gene ID: HRGMv2_3650_18_69
Type: TC
Location: 67811 - 69076 (-)
Type: TC
Location: 67811 - 69076 (-)
Gene ID: HRGMv2_3650_18_70
Type: TC
Location: 69073 - 70347 (-)
Type: TC
Location: 69073 - 70347 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.