Cluster: HRGMv2_3650_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_44 | 41276 | 42337 | - | 3.A.23.1.1 |
| CAZyme | HRGMv2_3650_18 | HRGMv2_3650_18_45 | 42344 | 43084 | - | GT26 |
| pfam | HRGMv2_3650_18 | HRGMv2_3650_18_46 | 43086 | 43895 | - | Methyltrans_RNA |
| TC | HRGMv2_3650_18 | HRGMv2_3650_18_47 | 43892 | 45346 | - | 9.B.174.1.1 |
Gene ID: HRGMv2_3650_18_44
Type: TC
Location: 41276 - 42337 (-)
Type: TC
Location: 41276 - 42337 (-)
Gene ID: HRGMv2_3650_18_45
Type: CAZyme
Location: 42344 - 43084 (-)
Type: CAZyme
Location: 42344 - 43084 (-)
Gene ID: HRGMv2_3650_18_46
Type: pfam
Location: 43086 - 43895 (-)
Type: pfam
Location: 43086 - 43895 (-)
Gene ID: HRGMv2_3650_18_47
Type: TC
Location: 43892 - 45346 (-)
Type: TC
Location: 43892 - 45346 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.