Cluster: HRGMv2_3650_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3650_1 | HRGMv2_3650_1_79 | 78113 | 80908 | + | 3.A.12.1.1 |
| CAZyme | HRGMv2_3650_1 | HRGMv2_3650_1_80 | 80929 | 81885 | + | GH18 |
| NULL(UNKNOWN) | HRGMv2_3650_1 | HRGMv2_3650_1_81 | 82032 | 83738 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3650_1 | HRGMv2_3650_1_82 | 83933 | 84712 | + | 3.A.1.24.5 |
Gene ID: HRGMv2_3650_1_79
Type: TC
Location: 78113 - 80908 (+)
Type: TC
Location: 78113 - 80908 (+)
Gene ID: HRGMv2_3650_1_80
Type: CAZyme
Location: 80929 - 81885 (+)
Type: CAZyme
Location: 80929 - 81885 (+)
Gene ID: HRGMv2_3650_1_81
Type:
Location: 82032 - 83738 (-)
Type:
Location: 82032 - 83738 (-)
Gene ID: HRGMv2_3650_1_82
Type: TC
Location: 83933 - 84712 (+)
Type: TC
Location: 83933 - 84712 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.