Cluster: HRGMv2_3650_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3650_14 | HRGMv2_3650_14_51 | 46147 | 47346 | + | 3.A.1.1.2 |
| TC | HRGMv2_3650_14 | HRGMv2_3650_14_52 | 47605 | 48927 | + | 3.A.1.1.6 |
| TC | HRGMv2_3650_14 | HRGMv2_3650_14_53 | 48924 | 49766 | + | 3.A.1.1.6 |
| NULL(UNKNOWN) | HRGMv2_3650_14 | HRGMv2_3650_14_54 | 50562 | 52121 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3650_14 | HRGMv2_3650_14_55 | 52589 | 54769 | + | GH35 |
Gene ID: HRGMv2_3650_14_51
Type: TC
Location: 46147 - 47346 (+)
Type: TC
Location: 46147 - 47346 (+)
Gene ID: HRGMv2_3650_14_52
Type: TC
Location: 47605 - 48927 (+)
Type: TC
Location: 47605 - 48927 (+)
Gene ID: HRGMv2_3650_14_53
Type: TC
Location: 48924 - 49766 (+)
Type: TC
Location: 48924 - 49766 (+)
Gene ID: HRGMv2_3650_14_54
Type:
Location: 50562 - 52121 (-)
Type:
Location: 50562 - 52121 (-)
Gene ID: HRGMv2_3650_14_55
Type: CAZyme
Location: 52589 - 54769 (+)
Type: CAZyme
Location: 52589 - 54769 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.