Cluster: HRGMv2_3650_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3650_14 | HRGMv2_3650_14_28 | 20419 | 21186 | - | GH23 |
| NULL(UNKNOWN) | HRGMv2_3650_14 | HRGMv2_3650_14_29 | 21373 | 21867 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3650_14 | HRGMv2_3650_14_30 | 21864 | 23834 | - | GGDEF | Peripla_BP_3 |
| TC | HRGMv2_3650_14 | HRGMv2_3650_14_31 | 23963 | 25672 | + | 8.A.7.1.5 |
Gene ID: HRGMv2_3650_14_28
Type: CAZyme
Location: 20419 - 21186 (-)
Type: CAZyme
Location: 20419 - 21186 (-)
Gene ID: HRGMv2_3650_14_29
Type:
Location: 21373 - 21867 (-)
Type:
Location: 21373 - 21867 (-)
Gene ID: HRGMv2_3650_14_30
Type: STP
Location: 21864 - 23834 (-)
Type: STP
Location: 21864 - 23834 (-)
Gene ID: HRGMv2_3650_14_31
Type: TC
Location: 23963 - 25672 (+)
Type: TC
Location: 23963 - 25672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.