Cluster: HRGMv2_3650_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3650
- CGC Family ID: CGCFAM_01978
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3650_13 | HRGMv2_3650_13_37 | 38566 | 39393 | - | 3.A.1.33.1 |
| TC | HRGMv2_3650_13 | HRGMv2_3650_13_38 | 39390 | 40232 | - | 3.A.1.32.3 |
| pfam | HRGMv2_3650_13 | HRGMv2_3650_13_39 | 40254 | 40811 | - | TrpP |
| pfam | HRGMv2_3650_13 | HRGMv2_3650_13_40 | 40952 | 41851 | + | Ank | Ank | Ank | Ank_2 | Ank_3 | Ank_4 | Ank_4 | Ank_5 |
| CAZyme | HRGMv2_3650_13 | HRGMv2_3650_13_41 | 41855 | 43006 | + | GT28 |
Gene ID: HRGMv2_3650_13_37
Type: TC
Location: 38566 - 39393 (-)
Type: TC
Location: 38566 - 39393 (-)
Gene ID: HRGMv2_3650_13_38
Type: TC
Location: 39390 - 40232 (-)
Type: TC
Location: 39390 - 40232 (-)
Gene ID: HRGMv2_3650_13_39
Type: pfam
Location: 40254 - 40811 (-)
Type: pfam
Location: 40254 - 40811 (-)
Gene ID: HRGMv2_3650_13_40
Type: pfam
Location: 40952 - 41851 (+)
Type: pfam
Location: 40952 - 41851 (+)
Gene ID: HRGMv2_3650_13_41
Type: CAZyme
Location: 41855 - 43006 (+)
Type: CAZyme
Location: 41855 - 43006 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.