Cluster: HRGMv2_3650_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_91 | 90159 | 92171 | - | CBM61 | GH53 |
| pfam | HRGMv2_3650_9 | HRGMv2_3650_9_92 | 92322 | 93875 | - | SPOR |
| NULL(UNKNOWN) | HRGMv2_3650_9 | HRGMv2_3650_9_93 | 93883 | 94386 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3650_9 | HRGMv2_3650_9_94 | 94958 | 96256 | - | 2.A.66.1.33 |
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_95 | 96445 | 97101 | - | GT4 |
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_96 | 97153 | 97836 | - | GT4 |
| pfam | HRGMv2_3650_9 | HRGMv2_3650_9_97 | 97811 | 98302 | - | Glyco_transf_4 | Glyco_trans_4_2 | Glyco_trans_4_4 |
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_98 | 98421 | 99182 | - | GT32 |
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_99 | 99184 | 100158 | - | GT4 |
| pfam | HRGMv2_3650_9 | HRGMv2_3650_9_100 | 100161 | 101231 | - | EpsG |
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_101 | 101221 | 102150 | - | GT2 |
Gene ID: HRGMv2_3650_9_91
Type: CAZyme
Location: 90159 - 92171 (-)
Type: CAZyme
Location: 90159 - 92171 (-)
Gene ID: HRGMv2_3650_9_92
Type: pfam
Location: 92322 - 93875 (-)
Type: pfam
Location: 92322 - 93875 (-)
Gene ID: HRGMv2_3650_9_93
Type:
Location: 93883 - 94386 (-)
Type:
Location: 93883 - 94386 (-)
Gene ID: HRGMv2_3650_9_94
Type: TC
Location: 94958 - 96256 (-)
Type: TC
Location: 94958 - 96256 (-)
Gene ID: HRGMv2_3650_9_95
Type: CAZyme
Location: 96445 - 97101 (-)
Type: CAZyme
Location: 96445 - 97101 (-)
Gene ID: HRGMv2_3650_9_96
Type: CAZyme
Location: 97153 - 97836 (-)
Type: CAZyme
Location: 97153 - 97836 (-)
Gene ID: HRGMv2_3650_9_97
Type: pfam
Location: 97811 - 98302 (-)
Type: pfam
Location: 97811 - 98302 (-)
Gene ID: HRGMv2_3650_9_98
Type: CAZyme
Location: 98421 - 99182 (-)
Type: CAZyme
Location: 98421 - 99182 (-)
Gene ID: HRGMv2_3650_9_99
Type: CAZyme
Location: 99184 - 100158 (-)
Type: CAZyme
Location: 99184 - 100158 (-)
Gene ID: HRGMv2_3650_9_100
Type: pfam
Location: 100161 - 101231 (-)
Type: pfam
Location: 100161 - 101231 (-)
Gene ID: HRGMv2_3650_9_101
Type: CAZyme
Location: 101221 - 102150 (-)
Type: CAZyme
Location: 101221 - 102150 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.