Cluster: HRGMv2_3650_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3650_9 | HRGMv2_3650_9_62 | 63750 | 65114 | - | 2.A.66.1.33 |
| pfam | HRGMv2_3650_9 | HRGMv2_3650_9_63 | 65551 | 66735 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_64 | 66745 | 67800 | + | GT4 |
Gene ID: HRGMv2_3650_9_62
Type: TC
Location: 63750 - 65114 (-)
Type: TC
Location: 63750 - 65114 (-)
Gene ID: HRGMv2_3650_9_63
Type: pfam
Location: 65551 - 66735 (+)
Type: pfam
Location: 65551 - 66735 (+)
Gene ID: HRGMv2_3650_9_64
Type: CAZyme
Location: 66745 - 67800 (+)
Type: CAZyme
Location: 66745 - 67800 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.