dbCAN Logo

Cluster: HRGMv2_3650_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3650_9 HRGMv2_3650_9_50 51592 52992 + GH13_28
CAZyme HRGMv2_3650_9 HRGMv2_3650_9_51 53039 55036 + GH31_1
TC HRGMv2_3650_9 HRGMv2_3650_9_52 55215 55712 - 3.A.11.1.4
TC HRGMv2_3650_9 HRGMv2_3650_9_53 55999 57303 - 2.A.40.7.2
TC HRGMv2_3650_9 HRGMv2_3650_9_54 57673 58848 - 9.A.25.1.1
NULL(UNKNOWN) HRGMv2_3650_9 HRGMv2_3650_9_55 58790 59029 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3650_9 HRGMv2_3650_9_56 59391 60968 - tRNA-synt_1c | Anticodon_2
TC HRGMv2_3650_9 HRGMv2_3650_9_57 61417 62145 + 3.A.1.122.14
TC HRGMv2_3650_9 HRGMv2_3650_9_58 62165 62542 + 9.B.55.2.1
Gene ID: HRGMv2_3650_9_50
Type: CAZyme
Location: 51592 - 52992 (+)
Gene ID: HRGMv2_3650_9_51
Type: CAZyme
Location: 53039 - 55036 (+)
Gene ID: HRGMv2_3650_9_52
Type: TC
Location: 55215 - 55712 (-)
Gene ID: HRGMv2_3650_9_53
Type: TC
Location: 55999 - 57303 (-)
Gene ID: HRGMv2_3650_9_54
Type: TC
Location: 57673 - 58848 (-)
Gene ID: HRGMv2_3650_9_55
Type:
Location: 58790 - 59029 (-)
Gene ID: HRGMv2_3650_9_56
Type: pfam
Location: 59391 - 60968 (-)
Gene ID: HRGMv2_3650_9_57
Type: TC
Location: 61417 - 62145 (+)
Gene ID: HRGMv2_3650_9_58
Type: TC
Location: 62165 - 62542 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List