Cluster: HRGMv2_3650_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_32 | 29411 | 30892 | - | GT5 |
| STP | HRGMv2_3650_9 | HRGMv2_3650_9_33 | 30889 | 32094 | - | Aminotran_1_2 |
| TC | HRGMv2_3650_9 | HRGMv2_3650_9_34 | 32678 | 34360 | - | 3.A.1.2.3 |
| TC | HRGMv2_3650_9 | HRGMv2_3650_9_35 | 34378 | 35871 | - | 3.A.1.2.3 |
| pfam | HRGMv2_3650_9 | HRGMv2_3650_9_36 | 35993 | 37198 | - | Peripla_BP_4 | Peripla_BP_7 |
| TF | HRGMv2_3650_9 | HRGMv2_3650_9_37 | 37515 | 38543 | + | LacI |
| CAZyme | HRGMv2_3650_9 | HRGMv2_3650_9_38 | 38611 | 41079 | - | GH94 |
Gene ID: HRGMv2_3650_9_32
Type: CAZyme
Location: 29411 - 30892 (-)
Type: CAZyme
Location: 29411 - 30892 (-)
Gene ID: HRGMv2_3650_9_33
Type: STP
Location: 30889 - 32094 (-)
Type: STP
Location: 30889 - 32094 (-)
Gene ID: HRGMv2_3650_9_34
Type: TC
Location: 32678 - 34360 (-)
Type: TC
Location: 32678 - 34360 (-)
Gene ID: HRGMv2_3650_9_35
Type: TC
Location: 34378 - 35871 (-)
Type: TC
Location: 34378 - 35871 (-)
Gene ID: HRGMv2_3650_9_36
Type: pfam
Location: 35993 - 37198 (-)
Type: pfam
Location: 35993 - 37198 (-)
Gene ID: HRGMv2_3650_9_37
Type: TF
Location: 37515 - 38543 (+)
Type: TF
Location: 37515 - 38543 (+)
Gene ID: HRGMv2_3650_9_38
Type: CAZyme
Location: 38611 - 41079 (-)
Type: CAZyme
Location: 38611 - 41079 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.