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Cluster: HRGMv2_3650_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3650_9 HRGMv2_3650_9_3 1917 2519 - GT4
pfam HRGMv2_3650_9 HRGMv2_3650_9_4 2550 3101 - Glyco_transf_4 | Glyco_trans_4_2 | Glyco_trans_4_4
CAZyme HRGMv2_3650_9 HRGMv2_3650_9_5 3098 3850 - GT2
CAZyme HRGMv2_3650_9 HRGMv2_3650_9_6 3847 4608 - GT32
pfam HRGMv2_3650_9 HRGMv2_3650_9_7 4605 5771 - EpsG
pfam HRGMv2_3650_9 HRGMv2_3650_9_8 5774 6442 - Hexapep | Hexapep_2
CAZyme HRGMv2_3650_9 HRGMv2_3650_9_9 6439 7329 - GT2
pfam HRGMv2_3650_9 HRGMv2_3650_9_10 7329 8159 - Epimerase
pfam HRGMv2_3650_9 HRGMv2_3650_9_11 8156 8740 - Hexapep | Hexapep_2
TC HRGMv2_3650_9 HRGMv2_3650_9_12 8734 10239 - 2.A.66.2.23
Gene ID: HRGMv2_3650_9_3
Type: CAZyme
Location: 1917 - 2519 (-)
Gene ID: HRGMv2_3650_9_4
Type: pfam
Location: 2550 - 3101 (-)
Gene ID: HRGMv2_3650_9_5
Type: CAZyme
Location: 3098 - 3850 (-)
Gene ID: HRGMv2_3650_9_6
Type: CAZyme
Location: 3847 - 4608 (-)
Gene ID: HRGMv2_3650_9_7
Type: pfam
Location: 4605 - 5771 (-)
Gene ID: HRGMv2_3650_9_8
Type: pfam
Location: 5774 - 6442 (-)
Gene ID: HRGMv2_3650_9_9
Type: CAZyme
Location: 6439 - 7329 (-)
Gene ID: HRGMv2_3650_9_10
Type: pfam
Location: 7329 - 8159 (-)
Gene ID: HRGMv2_3650_9_11
Type: pfam
Location: 8156 - 8740 (-)
Gene ID: HRGMv2_3650_9_12
Type: TC
Location: 8734 - 10239 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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