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Cluster: HRGMv2_3650_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3650_1 HRGMv2_3650_1_48 43473 45632 - CBM4 | GH9
CAZyme HRGMv2_3650_1 HRGMv2_3650_1_49 45968 47452 - GH77
TF HRGMv2_3650_1 HRGMv2_3650_1_50 47476 48513 - LacI
TC HRGMv2_3650_1 HRGMv2_3650_1_51 48612 49457 - 3.A.1.1.45
TC HRGMv2_3650_1 HRGMv2_3650_1_52 49454 50302 - 3.A.1.1.45
TC HRGMv2_3650_1 HRGMv2_3650_1_53 50443 51774 - 3.A.1.1.45
TC HRGMv2_3650_1 HRGMv2_3650_1_54 52188 53705 + 2.A.21.2.3
pfam HRGMv2_3650_1 HRGMv2_3650_1_55 53903 54877 + ABC_sub_bind
TC HRGMv2_3650_1 HRGMv2_3650_1_56 54886 55803 + 3.A.1.34.1
TC HRGMv2_3650_1 HRGMv2_3650_1_57 55800 56603 + 3.A.1.34.1
TC HRGMv2_3650_1 HRGMv2_3650_1_58 56661 57890 + 2.A.23.3.4
pfam HRGMv2_3650_1 HRGMv2_3650_1_59 57892 58656 + Methyltrans_RNA
pfam HRGMv2_3650_1 HRGMv2_3650_1_60 58658 59902 + DUF763
TC HRGMv2_3650_1 HRGMv2_3650_1_61 59899 60552 - 3.A.1.24.5
TC HRGMv2_3650_1 HRGMv2_3650_1_62 60549 61568 - 3.A.1.24.2
pfam HRGMv2_3650_1 HRGMv2_3650_1_63 61674 62591 - PseudoU_synth_2
pfam HRGMv2_3650_1 HRGMv2_3650_1_64 62713 63513 + LRR_5 | LRR_5 | LRR_8
TC HRGMv2_3650_1 HRGMv2_3650_1_65 63582 65315 + 3.D.10.1.4
Gene ID: HRGMv2_3650_1_48
Type: CAZyme
Location: 43473 - 45632 (-)
Gene ID: HRGMv2_3650_1_49
Type: CAZyme
Location: 45968 - 47452 (-)
Gene ID: HRGMv2_3650_1_50
Type: TF
Location: 47476 - 48513 (-)
Gene ID: HRGMv2_3650_1_51
Type: TC
Location: 48612 - 49457 (-)
Gene ID: HRGMv2_3650_1_52
Type: TC
Location: 49454 - 50302 (-)
Gene ID: HRGMv2_3650_1_53
Type: TC
Location: 50443 - 51774 (-)
Gene ID: HRGMv2_3650_1_54
Type: TC
Location: 52188 - 53705 (+)
Gene ID: HRGMv2_3650_1_55
Type: pfam
Location: 53903 - 54877 (+)
Gene ID: HRGMv2_3650_1_56
Type: TC
Location: 54886 - 55803 (+)
Gene ID: HRGMv2_3650_1_57
Type: TC
Location: 55800 - 56603 (+)
Gene ID: HRGMv2_3650_1_58
Type: TC
Location: 56661 - 57890 (+)
Gene ID: HRGMv2_3650_1_59
Type: pfam
Location: 57892 - 58656 (+)
Gene ID: HRGMv2_3650_1_60
Type: pfam
Location: 58658 - 59902 (+)
Gene ID: HRGMv2_3650_1_61
Type: TC
Location: 59899 - 60552 (-)
Gene ID: HRGMv2_3650_1_62
Type: TC
Location: 60549 - 61568 (-)
Gene ID: HRGMv2_3650_1_63
Type: pfam
Location: 61674 - 62591 (-)
Gene ID: HRGMv2_3650_1_64
Type: pfam
Location: 62713 - 63513 (+)
Gene ID: HRGMv2_3650_1_65
Type: TC
Location: 63582 - 65315 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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