Cluster: HRGMv2_3646_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3646_3 | HRGMv2_3646_3_68 | 75428 | 78241 | + | 3.A.12.1.1 |
| CAZyme | HRGMv2_3646_3 | HRGMv2_3646_3_69 | 78258 | 79214 | + | GH18 |
| NULL(UNKNOWN) | HRGMv2_3646_3 | HRGMv2_3646_3_70 | 79331 | 81037 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3646_3 | HRGMv2_3646_3_71 | 81231 | 82010 | + | 3.A.1.24.5 |
Gene ID: HRGMv2_3646_3_68
Type: TC
Location: 75428 - 78241 (+)
Type: TC
Location: 75428 - 78241 (+)
Gene ID: HRGMv2_3646_3_69
Type: CAZyme
Location: 78258 - 79214 (+)
Type: CAZyme
Location: 78258 - 79214 (+)
Gene ID: HRGMv2_3646_3_70
Type:
Location: 79331 - 81037 (-)
Type:
Location: 79331 - 81037 (-)
Gene ID: HRGMv2_3646_3_71
Type: TC
Location: 81231 - 82010 (+)
Type: TC
Location: 81231 - 82010 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.