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Cluster: HRGMv2_3646_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3646_3 HRGMv2_3646_3_36 40973 43132 - CBM4 | GH9
CAZyme HRGMv2_3646_3 HRGMv2_3646_3_37 43507 44991 - GH77
TF HRGMv2_3646_3 HRGMv2_3646_3_38 45015 46052 - LacI
TC HRGMv2_3646_3 HRGMv2_3646_3_39 46147 46992 - 3.A.1.1.45
TC HRGMv2_3646_3 HRGMv2_3646_3_40 46989 47837 - 3.A.1.1.45
NULL(UNKNOWN) HRGMv2_3646_3 HRGMv2_3646_3_41 47841 47957 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3646_3 HRGMv2_3646_3_42 47979 49310 - 3.A.1.1.45
TC HRGMv2_3646_3 HRGMv2_3646_3_43 49739 51256 + 2.A.21.2.3
pfam HRGMv2_3646_3 HRGMv2_3646_3_44 51470 52444 + ABC_sub_bind
TC HRGMv2_3646_3 HRGMv2_3646_3_45 52453 53370 + 3.A.1.34.1
TC HRGMv2_3646_3 HRGMv2_3646_3_46 53367 54170 + 3.A.1.34.1
TC HRGMv2_3646_3 HRGMv2_3646_3_47 54228 55457 + 2.A.23.3.4
pfam HRGMv2_3646_3 HRGMv2_3646_3_48 55459 56223 + Methyltrans_RNA
pfam HRGMv2_3646_3 HRGMv2_3646_3_49 56225 57469 + DUF763
TC HRGMv2_3646_3 HRGMv2_3646_3_50 57466 58119 - 3.A.1.24.5
TC HRGMv2_3646_3 HRGMv2_3646_3_51 58116 59135 - 3.A.1.24.2
pfam HRGMv2_3646_3 HRGMv2_3646_3_52 59242 60228 - PseudoU_synth_2
pfam HRGMv2_3646_3 HRGMv2_3646_3_53 60421 61221 + LRR_5 | LRR_5 | LRR_8
TC HRGMv2_3646_3 HRGMv2_3646_3_54 61290 63023 + 3.D.10.1.4
Gene ID: HRGMv2_3646_3_36
Type: CAZyme
Location: 40973 - 43132 (-)
Gene ID: HRGMv2_3646_3_37
Type: CAZyme
Location: 43507 - 44991 (-)
Gene ID: HRGMv2_3646_3_38
Type: TF
Location: 45015 - 46052 (-)
Gene ID: HRGMv2_3646_3_39
Type: TC
Location: 46147 - 46992 (-)
Gene ID: HRGMv2_3646_3_40
Type: TC
Location: 46989 - 47837 (-)
Gene ID: HRGMv2_3646_3_41
Type:
Location: 47841 - 47957 (-)
Gene ID: HRGMv2_3646_3_42
Type: TC
Location: 47979 - 49310 (-)
Gene ID: HRGMv2_3646_3_43
Type: TC
Location: 49739 - 51256 (+)
Gene ID: HRGMv2_3646_3_44
Type: pfam
Location: 51470 - 52444 (+)
Gene ID: HRGMv2_3646_3_45
Type: TC
Location: 52453 - 53370 (+)
Gene ID: HRGMv2_3646_3_46
Type: TC
Location: 53367 - 54170 (+)
Gene ID: HRGMv2_3646_3_47
Type: TC
Location: 54228 - 55457 (+)
Gene ID: HRGMv2_3646_3_48
Type: pfam
Location: 55459 - 56223 (+)
Gene ID: HRGMv2_3646_3_49
Type: pfam
Location: 56225 - 57469 (+)
Gene ID: HRGMv2_3646_3_50
Type: TC
Location: 57466 - 58119 (-)
Gene ID: HRGMv2_3646_3_51
Type: TC
Location: 58116 - 59135 (-)
Gene ID: HRGMv2_3646_3_52
Type: pfam
Location: 59242 - 60228 (-)
Gene ID: HRGMv2_3646_3_53
Type: pfam
Location: 60421 - 61221 (+)
Gene ID: HRGMv2_3646_3_54
Type: TC
Location: 61290 - 63023 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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