Cluster: HRGMv2_3646_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3646
- CGC Family ID: CGCFAM_01771
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3646_2 | HRGMv2_3646_2_152 | 163164 | 164363 | + | 3.A.1.1.2 |
| TC | HRGMv2_3646_2 | HRGMv2_3646_2_153 | 164618 | 165940 | + | 3.A.1.1.6 |
| TC | HRGMv2_3646_2 | HRGMv2_3646_2_154 | 165937 | 166779 | + | 3.A.1.1.6 |
| NULL(UNKNOWN) | HRGMv2_3646_2 | HRGMv2_3646_2_155 | 167665 | 169164 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3646_2 | HRGMv2_3646_2_156 | 169558 | 171738 | + | GH35 |
| TC | HRGMv2_3646_2 | HRGMv2_3646_2_157 | 171932 | 173671 | + | 3.A.1.120.6 |
Gene ID: HRGMv2_3646_2_152
Type: TC
Location: 163164 - 164363 (+)
Type: TC
Location: 163164 - 164363 (+)
Gene ID: HRGMv2_3646_2_153
Type: TC
Location: 164618 - 165940 (+)
Type: TC
Location: 164618 - 165940 (+)
Gene ID: HRGMv2_3646_2_154
Type: TC
Location: 165937 - 166779 (+)
Type: TC
Location: 165937 - 166779 (+)
Gene ID: HRGMv2_3646_2_155
Type:
Location: 167665 - 169164 (-)
Type:
Location: 167665 - 169164 (-)
Gene ID: HRGMv2_3646_2_156
Type: CAZyme
Location: 169558 - 171738 (+)
Type: CAZyme
Location: 169558 - 171738 (+)
Gene ID: HRGMv2_3646_2_157
Type: TC
Location: 171932 - 173671 (+)
Type: TC
Location: 171932 - 173671 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.