Cluster: HRGMv2_3646_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3646_2 | HRGMv2_3646_2_129 | 137501 | 138268 | - | GH23 |
| NULL(UNKNOWN) | HRGMv2_3646_2 | HRGMv2_3646_2_130 | 138454 | 138948 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3646_2 | HRGMv2_3646_2_131 | 138945 | 140915 | - | GGDEF | Peripla_BP_3 |
| TC | HRGMv2_3646_2 | HRGMv2_3646_2_132 | 141046 | 142755 | + | 8.A.7.1.5 |
Gene ID: HRGMv2_3646_2_129
Type: CAZyme
Location: 137501 - 138268 (-)
Type: CAZyme
Location: 137501 - 138268 (-)
Gene ID: HRGMv2_3646_2_130
Type:
Location: 138454 - 138948 (-)
Type:
Location: 138454 - 138948 (-)
Gene ID: HRGMv2_3646_2_131
Type: STP
Location: 138945 - 140915 (-)
Type: STP
Location: 138945 - 140915 (-)
Gene ID: HRGMv2_3646_2_132
Type: TC
Location: 141046 - 142755 (+)
Type: TC
Location: 141046 - 142755 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.