Cluster: HRGMv2_3646_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3646_1 | HRGMv2_3646_1_231 | 265857 | 268628 | - | GH3 |
| TF | HRGMv2_3646_1 | HRGMv2_3646_1_232 | 268774 | 269661 | + | HTH_AraC |
| TC | HRGMv2_3646_1 | HRGMv2_3646_1_233 | 269761 | 270207 | + | 4.A.2.1.4 |
Gene ID: HRGMv2_3646_1_231
Type: CAZyme
Location: 265857 - 268628 (-)
Type: CAZyme
Location: 265857 - 268628 (-)
Gene ID: HRGMv2_3646_1_232
Type: TF
Location: 268774 - 269661 (+)
Type: TF
Location: 268774 - 269661 (+)
Gene ID: HRGMv2_3646_1_233
Type: TC
Location: 269761 - 270207 (+)
Type: TC
Location: 269761 - 270207 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.