Cluster: HRGMv2_3646_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3646_13 | HRGMv2_3646_13_12 | 13863 | 15089 | + | GT4 |
| pfam | HRGMv2_3646_13 | HRGMv2_3646_13_13 | 15041 | 15910 | + | UDG |
| TC | HRGMv2_3646_13 | HRGMv2_3646_13_14 | 15900 | 17909 | + | 3.A.11.3.1 |
| pfam | HRGMv2_3646_13 | HRGMv2_3646_13_15 | 18177 | 19871 | - | AMP-binding | AMP-binding_C |
| TC | HRGMv2_3646_13 | HRGMv2_3646_13_16 | 20047 | 22788 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_3646_13_12
Type: CAZyme
Location: 13863 - 15089 (+)
Type: CAZyme
Location: 13863 - 15089 (+)
Gene ID: HRGMv2_3646_13_13
Type: pfam
Location: 15041 - 15910 (+)
Type: pfam
Location: 15041 - 15910 (+)
Gene ID: HRGMv2_3646_13_14
Type: TC
Location: 15900 - 17909 (+)
Type: TC
Location: 15900 - 17909 (+)
Gene ID: HRGMv2_3646_13_15
Type: pfam
Location: 18177 - 19871 (-)
Type: pfam
Location: 18177 - 19871 (-)
Gene ID: HRGMv2_3646_13_16
Type: TC
Location: 20047 - 22788 (+)
Type: TC
Location: 20047 - 22788 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.