Cluster: HRGMv2_3646_CGC23
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3646
- CGC Family ID: CGCFAM_01866
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3646_11 | HRGMv2_3646_11_63 | 72038 | 73849 | - | GT8 |
| CAZyme | HRGMv2_3646_11 | HRGMv2_3646_11_64 | 73842 | 74678 | - | GT8 |
| NULL(UNKNOWN) | HRGMv2_3646_11 | HRGMv2_3646_11_65 | 74727 | 75512 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3646_11 | HRGMv2_3646_11_66 | 75639 | 76595 | + | 3.A.1.34.1 |
| TC | HRGMv2_3646_11 | HRGMv2_3646_11_67 | 76741 | 77703 | + | 3.A.1.34.1 |
| TC | HRGMv2_3646_11 | HRGMv2_3646_11_68 | 77696 | 78499 | + | 3.A.1.34.1 |
| pfam | HRGMv2_3646_11 | HRGMv2_3646_11_69 | 78507 | 78767 | + | TSCPD |
| TC | HRGMv2_3646_11 | HRGMv2_3646_11_70 | 78931 | 79746 | - | 3.A.1.1.4 |
| TC | HRGMv2_3646_11 | HRGMv2_3646_11_71 | 79743 | 80627 | - | 3.A.1.1.4 |
| TC | HRGMv2_3646_11 | HRGMv2_3646_11_72 | 80707 | 81987 | - | 3.A.1.1.4 |
| CAZyme | HRGMv2_3646_11 | HRGMv2_3646_11_73 | 82193 | 85279 | + | GH2 |
| TC | HRGMv2_3646_11 | HRGMv2_3646_11_74 | 85744 | 86784 | + | 9.A.25.1.1 |
Gene ID: HRGMv2_3646_11_63
Type: CAZyme
Location: 72038 - 73849 (-)
Type: CAZyme
Location: 72038 - 73849 (-)
Gene ID: HRGMv2_3646_11_64
Type: CAZyme
Location: 73842 - 74678 (-)
Type: CAZyme
Location: 73842 - 74678 (-)
Gene ID: HRGMv2_3646_11_65
Type:
Location: 74727 - 75512 (-)
Type:
Location: 74727 - 75512 (-)
Gene ID: HRGMv2_3646_11_66
Type: TC
Location: 75639 - 76595 (+)
Type: TC
Location: 75639 - 76595 (+)
Gene ID: HRGMv2_3646_11_67
Type: TC
Location: 76741 - 77703 (+)
Type: TC
Location: 76741 - 77703 (+)
Gene ID: HRGMv2_3646_11_68
Type: TC
Location: 77696 - 78499 (+)
Type: TC
Location: 77696 - 78499 (+)
Gene ID: HRGMv2_3646_11_69
Type: pfam
Location: 78507 - 78767 (+)
Type: pfam
Location: 78507 - 78767 (+)
Gene ID: HRGMv2_3646_11_70
Type: TC
Location: 78931 - 79746 (-)
Type: TC
Location: 78931 - 79746 (-)
Gene ID: HRGMv2_3646_11_71
Type: TC
Location: 79743 - 80627 (-)
Type: TC
Location: 79743 - 80627 (-)
Gene ID: HRGMv2_3646_11_72
Type: TC
Location: 80707 - 81987 (-)
Type: TC
Location: 80707 - 81987 (-)
Gene ID: HRGMv2_3646_11_73
Type: CAZyme
Location: 82193 - 85279 (+)
Type: CAZyme
Location: 82193 - 85279 (+)
Gene ID: HRGMv2_3646_11_74
Type: TC
Location: 85744 - 86784 (+)
Type: TC
Location: 85744 - 86784 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.