Cluster: HRGMv2_3646_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3646_6 | HRGMv2_3646_6_42 | 41484 | 42398 | + | 3.A.1.1.11 |
| TC | HRGMv2_3646_6 | HRGMv2_3646_6_43 | 42449 | 43477 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_3646_6 | HRGMv2_3646_6_44 | 43480 | 44874 | + | GH30_1 |
Gene ID: HRGMv2_3646_6_42
Type: TC
Location: 41484 - 42398 (+)
Type: TC
Location: 41484 - 42398 (+)
Gene ID: HRGMv2_3646_6_43
Type: TC
Location: 42449 - 43477 (+)
Type: TC
Location: 42449 - 43477 (+)
Gene ID: HRGMv2_3646_6_44
Type: CAZyme
Location: 43480 - 44874 (+)
Type: CAZyme
Location: 43480 - 44874 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.