Cluster: HRGMv2_3646_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3646_1 | HRGMv2_3646_1_206 | 238492 | 239373 | + | 3.A.1.1.28 |
| TC | HRGMv2_3646_1 | HRGMv2_3646_1_207 | 239398 | 240555 | + | 3.A.1.1.18 |
| CAZyme | HRGMv2_3646_1 | HRGMv2_3646_1_208 | 240567 | 242696 | + | CBM27 | GH5_7 |
| pfam | HRGMv2_3646_1 | HRGMv2_3646_1_209 | 242713 | 243894 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_3646_1 | HRGMv2_3646_1_210 | 243891 | 245066 | + | GH130_1 |
| CAZyme | HRGMv2_3646_1 | HRGMv2_3646_1_211 | 245085 | 246074 | + | GH130_2 |
Gene ID: HRGMv2_3646_1_206
Type: TC
Location: 238492 - 239373 (+)
Type: TC
Location: 238492 - 239373 (+)
Gene ID: HRGMv2_3646_1_207
Type: TC
Location: 239398 - 240555 (+)
Type: TC
Location: 239398 - 240555 (+)
Gene ID: HRGMv2_3646_1_208
Type: CAZyme
Location: 240567 - 242696 (+)
Type: CAZyme
Location: 240567 - 242696 (+)
Gene ID: HRGMv2_3646_1_209
Type: pfam
Location: 242713 - 243894 (+)
Type: pfam
Location: 242713 - 243894 (+)
Gene ID: HRGMv2_3646_1_210
Type: CAZyme
Location: 243891 - 245066 (+)
Type: CAZyme
Location: 243891 - 245066 (+)
Gene ID: HRGMv2_3646_1_211
Type: CAZyme
Location: 245085 - 246074 (+)
Type: CAZyme
Location: 245085 - 246074 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.