Cluster: HRGMv2_3646_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3646_4 | HRGMv2_3646_4_151 | 164975 | 165802 | - | 3.A.1.33.1 |
| TC | HRGMv2_3646_4 | HRGMv2_3646_4_152 | 165799 | 166641 | - | 3.A.1.32.3 |
| pfam | HRGMv2_3646_4 | HRGMv2_3646_4_153 | 166656 | 167213 | - | TrpP |
| pfam | HRGMv2_3646_4 | HRGMv2_3646_4_154 | 167356 | 168267 | + | Ank | Ank | Ank | Ank_2 | Ank_2 | Ank_3 | Ank_4 |
| CAZyme | HRGMv2_3646_4 | HRGMv2_3646_4_155 | 168260 | 169411 | + | GT28 |
Gene ID: HRGMv2_3646_4_151
Type: TC
Location: 164975 - 165802 (-)
Type: TC
Location: 164975 - 165802 (-)
Gene ID: HRGMv2_3646_4_152
Type: TC
Location: 165799 - 166641 (-)
Type: TC
Location: 165799 - 166641 (-)
Gene ID: HRGMv2_3646_4_153
Type: pfam
Location: 166656 - 167213 (-)
Type: pfam
Location: 166656 - 167213 (-)
Gene ID: HRGMv2_3646_4_154
Type: pfam
Location: 167356 - 168267 (+)
Type: pfam
Location: 167356 - 168267 (+)
Gene ID: HRGMv2_3646_4_155
Type: CAZyme
Location: 168260 - 169411 (+)
Type: CAZyme
Location: 168260 - 169411 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.