Cluster: HRGMv2_3646_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3646
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3646_4 | HRGMv2_3646_4_82 | 90135 | 92603 | + | GH94 |
| TF | HRGMv2_3646_4 | HRGMv2_3646_4_83 | 92674 | 93702 | - | LacI |
| pfam | HRGMv2_3646_4 | HRGMv2_3646_4_84 | 94022 | 95227 | + | Peripla_BP_4 | Peripla_BP_7 |
| TC | HRGMv2_3646_4 | HRGMv2_3646_4_85 | 95413 | 96906 | + | 3.A.1.2.3 |
| TC | HRGMv2_3646_4 | HRGMv2_3646_4_86 | 96924 | 98606 | + | 3.A.1.2.3 |
| STP | HRGMv2_3646_4 | HRGMv2_3646_4_87 | 99373 | 100578 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_3646_4 | HRGMv2_3646_4_88 | 100575 | 102056 | + | GT5 |
Gene ID: HRGMv2_3646_4_82
Type: CAZyme
Location: 90135 - 92603 (+)
Type: CAZyme
Location: 90135 - 92603 (+)
Gene ID: HRGMv2_3646_4_83
Type: TF
Location: 92674 - 93702 (-)
Type: TF
Location: 92674 - 93702 (-)
Gene ID: HRGMv2_3646_4_84
Type: pfam
Location: 94022 - 95227 (+)
Type: pfam
Location: 94022 - 95227 (+)
Gene ID: HRGMv2_3646_4_85
Type: TC
Location: 95413 - 96906 (+)
Type: TC
Location: 95413 - 96906 (+)
Gene ID: HRGMv2_3646_4_86
Type: TC
Location: 96924 - 98606 (+)
Type: TC
Location: 96924 - 98606 (+)
Gene ID: HRGMv2_3646_4_87
Type: STP
Location: 99373 - 100578 (+)
Type: STP
Location: 99373 - 100578 (+)
Gene ID: HRGMv2_3646_4_88
Type: CAZyme
Location: 100575 - 102056 (+)
Type: CAZyme
Location: 100575 - 102056 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.