Cluster: HRGMv2_3646_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3646
- CGC Family ID: CGCFAM_09395
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3646_4 | HRGMv2_3646_4_64 | 69886 | 70941 | - | GT4 |
| pfam | HRGMv2_3646_4 | HRGMv2_3646_4_65 | 70951 | 72135 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | HRGMv2_3646_4 | HRGMv2_3646_4_66 | 72683 | 73972 | + | FGE-sulfatase |
| TC | HRGMv2_3646_4 | HRGMv2_3646_4_67 | 74165 | 75469 | + | 2.A.40.7.2 |
| TC | HRGMv2_3646_4 | HRGMv2_3646_4_68 | 75590 | 76087 | + | 3.A.11.1.4 |
| CAZyme | HRGMv2_3646_4 | HRGMv2_3646_4_69 | 76265 | 78262 | - | GH31_1 |
| CAZyme | HRGMv2_3646_4 | HRGMv2_3646_4_70 | 78392 | 79792 | - | GH13_28 |
Gene ID: HRGMv2_3646_4_64
Type: CAZyme
Location: 69886 - 70941 (-)
Type: CAZyme
Location: 69886 - 70941 (-)
Gene ID: HRGMv2_3646_4_65
Type: pfam
Location: 70951 - 72135 (-)
Type: pfam
Location: 70951 - 72135 (-)
Gene ID: HRGMv2_3646_4_66
Type: pfam
Location: 72683 - 73972 (+)
Type: pfam
Location: 72683 - 73972 (+)
Gene ID: HRGMv2_3646_4_67
Type: TC
Location: 74165 - 75469 (+)
Type: TC
Location: 74165 - 75469 (+)
Gene ID: HRGMv2_3646_4_68
Type: TC
Location: 75590 - 76087 (+)
Type: TC
Location: 75590 - 76087 (+)
Gene ID: HRGMv2_3646_4_69
Type: CAZyme
Location: 76265 - 78262 (-)
Type: CAZyme
Location: 76265 - 78262 (-)
Gene ID: HRGMv2_3646_4_70
Type: CAZyme
Location: 78392 - 79792 (-)
Type: CAZyme
Location: 78392 - 79792 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.