dbCAN Logo

Cluster: HRGMv2_3646_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3646_3 HRGMv2_3646_3_157 174028 175302 + 9.A.40.2.1
TC HRGMv2_3646_3 HRGMv2_3646_3_158 175299 176564 + 9.A.40.2.4
pfam HRGMv2_3646_3 HRGMv2_3646_3_159 176559 177209 - Cytidylate_kin2
pfam HRGMv2_3646_3 HRGMv2_3646_3_160 177282 178028 - PseudoU_synth_2
TC HRGMv2_3646_3 HRGMv2_3646_3_161 178073 178843 - 3.A.1.14.6
TC HRGMv2_3646_3 HRGMv2_3646_3_162 178831 179799 - 3.A.1.14.16
TC HRGMv2_3646_3 HRGMv2_3646_3_163 179808 180650 - 3.A.1.14.19
STP HRGMv2_3646_3 HRGMv2_3646_3_164 180651 181337 - Pribosyltran
CAZyme HRGMv2_3646_3 HRGMv2_3646_3_165 181420 183846 - GH94
STP HRGMv2_3646_3 HRGMv2_3646_3_166 184128 185432 + SBP_bac_1
TC HRGMv2_3646_3 HRGMv2_3646_3_167 185522 186481 + 3.A.1.1.4
TC HRGMv2_3646_3 HRGMv2_3646_3_168 186497 187336 + 3.A.1.1.34
CAZyme HRGMv2_3646_3 HRGMv2_3646_3_169 187361 188956 + CBM91 | GH43_11
Gene ID: HRGMv2_3646_3_157
Type: TC
Location: 174028 - 175302 (+)
Gene ID: HRGMv2_3646_3_158
Type: TC
Location: 175299 - 176564 (+)
Gene ID: HRGMv2_3646_3_159
Type: pfam
Location: 176559 - 177209 (-)
Gene ID: HRGMv2_3646_3_160
Type: pfam
Location: 177282 - 178028 (-)
Gene ID: HRGMv2_3646_3_161
Type: TC
Location: 178073 - 178843 (-)
Gene ID: HRGMv2_3646_3_162
Type: TC
Location: 178831 - 179799 (-)
Gene ID: HRGMv2_3646_3_163
Type: TC
Location: 179808 - 180650 (-)
Gene ID: HRGMv2_3646_3_164
Type: STP
Location: 180651 - 181337 (-)
Gene ID: HRGMv2_3646_3_165
Type: CAZyme
Location: 181420 - 183846 (-)
Gene ID: HRGMv2_3646_3_166
Type: STP
Location: 184128 - 185432 (+)
Gene ID: HRGMv2_3646_3_167
Type: TC
Location: 185522 - 186481 (+)
Gene ID: HRGMv2_3646_3_168
Type: TC
Location: 186497 - 187336 (+)
Gene ID: HRGMv2_3646_3_169
Type: CAZyme
Location: 187361 - 188956 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List