dbCAN Logo

Cluster: HRGMv2_3625_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3625_18 HRGMv2_3625_18_21 22366 23370 + 3.A.1.1.10
TC HRGMv2_3625_18 HRGMv2_3625_18_22 23372 24259 + 3.A.1.1.29
TC HRGMv2_3625_18 HRGMv2_3625_18_23 24263 25885 + 3.A.1.1.10
CAZyme HRGMv2_3625_18 HRGMv2_3625_18_24 25894 27351 + GH32
pfam HRGMv2_3625_18 HRGMv2_3625_18_25 27351 28226 + ROK
TC HRGMv2_3625_18 HRGMv2_3625_18_26 28230 29342 + 3.A.1.1.28
NULL(UNKNOWN) HRGMv2_3625_18 HRGMv2_3625_18_27 29530 30180 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3625_18 HRGMv2_3625_18_28 30348 31262 + HTH_3
TC HRGMv2_3625_18 HRGMv2_3625_18_29 31357 33123 + 3.A.1.111.2
TC HRGMv2_3625_18 HRGMv2_3625_18_30 33116 34870 + 3.A.1.111.3
TF HRGMv2_3625_18 HRGMv2_3625_18_31 35015 35254 + HTH_3
NULL(UNKNOWN) HRGMv2_3625_18 HRGMv2_3625_18_32 35255 35455 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3625_18 HRGMv2_3625_18_33 35452 37182 + 3.A.1.111.2
TC HRGMv2_3625_18 HRGMv2_3625_18_34 37175 38905 + 3.A.1.111.3
Gene ID: HRGMv2_3625_18_21
Type: TC
Location: 22366 - 23370 (+)
Gene ID: HRGMv2_3625_18_22
Type: TC
Location: 23372 - 24259 (+)
Gene ID: HRGMv2_3625_18_23
Type: TC
Location: 24263 - 25885 (+)
Gene ID: HRGMv2_3625_18_24
Type: CAZyme
Location: 25894 - 27351 (+)
Gene ID: HRGMv2_3625_18_25
Type: pfam
Location: 27351 - 28226 (+)
Gene ID: HRGMv2_3625_18_26
Type: TC
Location: 28230 - 29342 (+)
Gene ID: HRGMv2_3625_18_27
Type:
Location: 29530 - 30180 (+)
Gene ID: HRGMv2_3625_18_28
Type: TF
Location: 30348 - 31262 (+)
Gene ID: HRGMv2_3625_18_29
Type: TC
Location: 31357 - 33123 (+)
Gene ID: HRGMv2_3625_18_30
Type: TC
Location: 33116 - 34870 (+)
Gene ID: HRGMv2_3625_18_31
Type: TF
Location: 35015 - 35254 (+)
Gene ID: HRGMv2_3625_18_32
Type:
Location: 35255 - 35455 (+)
Gene ID: HRGMv2_3625_18_33
Type: TC
Location: 35452 - 37182 (+)
Gene ID: HRGMv2_3625_18_34
Type: TC
Location: 37175 - 38905 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List