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Cluster: HRGMv2_3625_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3625_10 HRGMv2_3625_10_14 11104 11760 + GH23
TC HRGMv2_3625_10 HRGMv2_3625_10_15 11826 13157 + 3.D.6.1.2
TC HRGMv2_3625_10 HRGMv2_3625_10_16 13168 14142 + 3.D.6.1.2
TC HRGMv2_3625_10 HRGMv2_3625_10_17 14135 14674 + 3.D.6.1.2
TC HRGMv2_3625_10 HRGMv2_3625_10_18 14683 15363 + 3.D.6.1.2
TC HRGMv2_3625_10 HRGMv2_3625_10_19 15372 15944 + 3.D.6.1.2
TC HRGMv2_3625_10 HRGMv2_3625_10_20 15954 16754 + 3.D.6.1.2
pfam HRGMv2_3625_10 HRGMv2_3625_10_21 16861 17241 + NusG_II
TC HRGMv2_3625_10 HRGMv2_3625_10_22 17238 17768 + 2.A.87.3.3
pfam HRGMv2_3625_10 HRGMv2_3625_10_23 17752 18432 + RadC | UPF0758_N
TC HRGMv2_3625_10 HRGMv2_3625_10_24 18446 19456 + 1.A.33.1.5
Gene ID: HRGMv2_3625_10_14
Type: CAZyme
Location: 11104 - 11760 (+)
Gene ID: HRGMv2_3625_10_15
Type: TC
Location: 11826 - 13157 (+)
Gene ID: HRGMv2_3625_10_16
Type: TC
Location: 13168 - 14142 (+)
Gene ID: HRGMv2_3625_10_17
Type: TC
Location: 14135 - 14674 (+)
Gene ID: HRGMv2_3625_10_18
Type: TC
Location: 14683 - 15363 (+)
Gene ID: HRGMv2_3625_10_19
Type: TC
Location: 15372 - 15944 (+)
Gene ID: HRGMv2_3625_10_20
Type: TC
Location: 15954 - 16754 (+)
Gene ID: HRGMv2_3625_10_21
Type: pfam
Location: 16861 - 17241 (+)
Gene ID: HRGMv2_3625_10_22
Type: TC
Location: 17238 - 17768 (+)
Gene ID: HRGMv2_3625_10_23
Type: pfam
Location: 17752 - 18432 (+)
Gene ID: HRGMv2_3625_10_24
Type: TC
Location: 18446 - 19456 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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