Cluster: HRGMv2_3621_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: alpha-mannan
- Genome ID: HRGMv2_3621
- CGC Family ID: CGCFAM_02290
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3621_5 | HRGMv2_3621_5_24 | 26387 | 27478 | + | 3.A.1.1.26 |
| NULL(UNKNOWN) | HRGMv2_3621_5 | HRGMv2_3621_5_25 | 27478 | 28119 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3621_5 | HRGMv2_3621_5_26 | 28131 | 29132 | + | 3.A.1.1.9 |
| TC | HRGMv2_3621_5 | HRGMv2_3621_5_27 | 29141 | 30064 | + | 3.A.1.1.29 |
| pfam | HRGMv2_3621_5 | HRGMv2_3621_5_28 | 30086 | 31639 | + | DUF3502 | SBP_bac_8 |
| pfam | HRGMv2_3621_5 | HRGMv2_3621_5_29 | 31658 | 33133 | + | SBP_bac_1 | DUF3502 | SBP_bac_8 |
| CAZyme | HRGMv2_3621_5 | HRGMv2_3621_5_30 | 33247 | 34542 | + | GH84 |
| CAZyme | HRGMv2_3621_5 | HRGMv2_3621_5_31 | 34539 | 37160 | + | GH38 |
| CAZyme | HRGMv2_3621_5 | HRGMv2_3621_5_32 | 37160 | 38440 | + | GH125 |
| TF | HRGMv2_3621_5 | HRGMv2_3621_5_33 | 38433 | 39164 | - | HTH_6 |
| pfam | HRGMv2_3621_5 | HRGMv2_3621_5_34 | 39206 | 40078 | + | ROK |
| CAZyme | HRGMv2_3621_5 | HRGMv2_3621_5_35 | 40071 | 41444 | + | GH1 |
Gene ID: HRGMv2_3621_5_24
Type: TC
Location: 26387 - 27478 (+)
Type: TC
Location: 26387 - 27478 (+)
Gene ID: HRGMv2_3621_5_25
Type:
Location: 27478 - 28119 (+)
Type:
Location: 27478 - 28119 (+)
Gene ID: HRGMv2_3621_5_26
Type: TC
Location: 28131 - 29132 (+)
Type: TC
Location: 28131 - 29132 (+)
Gene ID: HRGMv2_3621_5_27
Type: TC
Location: 29141 - 30064 (+)
Type: TC
Location: 29141 - 30064 (+)
Gene ID: HRGMv2_3621_5_28
Type: pfam
Location: 30086 - 31639 (+)
Type: pfam
Location: 30086 - 31639 (+)
Gene ID: HRGMv2_3621_5_29
Type: pfam
Location: 31658 - 33133 (+)
Type: pfam
Location: 31658 - 33133 (+)
Gene ID: HRGMv2_3621_5_30
Type: CAZyme
Location: 33247 - 34542 (+)
Type: CAZyme
Location: 33247 - 34542 (+)
Gene ID: HRGMv2_3621_5_31
Type: CAZyme
Location: 34539 - 37160 (+)
Type: CAZyme
Location: 34539 - 37160 (+)
Gene ID: HRGMv2_3621_5_32
Type: CAZyme
Location: 37160 - 38440 (+)
Type: CAZyme
Location: 37160 - 38440 (+)
Gene ID: HRGMv2_3621_5_33
Type: TF
Location: 38433 - 39164 (-)
Type: TF
Location: 38433 - 39164 (-)
Gene ID: HRGMv2_3621_5_34
Type: pfam
Location: 39206 - 40078 (+)
Type: pfam
Location: 39206 - 40078 (+)
Gene ID: HRGMv2_3621_5_35
Type: CAZyme
Location: 40071 - 41444 (+)
Type: CAZyme
Location: 40071 - 41444 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Peptoniphilaceae
Genus
Anaerococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.