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Cluster: HRGMv2_3615_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3615_2 HRGMv2_3615_2_127 107504 108493 + GH170
STP HRGMv2_3615_2 HRGMv2_3615_2_128 108468 109349 + SIS
TC HRGMv2_3615_2 HRGMv2_3615_2_129 109350 110819 + 4.A.1.2.7
STP HRGMv2_3615_2 HRGMv2_3615_2_130 111077 112171 + SpoIIE
pfam HRGMv2_3615_2 HRGMv2_3615_2_131 112172 112804 + DeoC
CAZyme HRGMv2_3615_2 HRGMv2_3615_2_132 112813 114264 + GH13_5
pfam HRGMv2_3615_2 HRGMv2_3615_2_133 114261 114842 + RNase_H | Cauli_VI | RVT_3
NULL(UNKNOWN) HRGMv2_3615_2 HRGMv2_3615_2_134 115067 116212 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3615_2 HRGMv2_3615_2_135 116495 117673 + 2.A.36.2.1
Gene ID: HRGMv2_3615_2_127
Type: CAZyme
Location: 107504 - 108493 (+)
Gene ID: HRGMv2_3615_2_128
Type: STP
Location: 108468 - 109349 (+)
Gene ID: HRGMv2_3615_2_129
Type: TC
Location: 109350 - 110819 (+)
Gene ID: HRGMv2_3615_2_130
Type: STP
Location: 111077 - 112171 (+)
Gene ID: HRGMv2_3615_2_131
Type: pfam
Location: 112172 - 112804 (+)
Gene ID: HRGMv2_3615_2_132
Type: CAZyme
Location: 112813 - 114264 (+)
Gene ID: HRGMv2_3615_2_133
Type: pfam
Location: 114261 - 114842 (+)
Gene ID: HRGMv2_3615_2_134
Type:
Location: 115067 - 116212 (-)
Gene ID: HRGMv2_3615_2_135
Type: TC
Location: 116495 - 117673 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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