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Cluster: HRGMv2_3615_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3615_11 HRGMv2_3615_11_1 166 1383 - GT4
TC HRGMv2_3615_11 HRGMv2_3615_11_2 1380 2309 - 3.A.1.20.3
TC HRGMv2_3615_11 HRGMv2_3615_11_3 2293 3936 - 3.A.1.20.1
TC HRGMv2_3615_11 HRGMv2_3615_11_4 3982 5151 - 3.A.1.20.4
pfam HRGMv2_3615_11 HRGMv2_3615_11_5 5217 5702 - PMSR
pfam HRGMv2_3615_11 HRGMv2_3615_11_6 5699 6172 - ThrE | ThrE_2
TC HRGMv2_3615_11 HRGMv2_3615_11_7 6173 6952 - 2.A.79.1.5
pfam HRGMv2_3615_11 HRGMv2_3615_11_8 6977 7753 - DnaJ
TC HRGMv2_3615_11 HRGMv2_3615_11_9 7836 9605 - 3.A.1.106.2
Gene ID: HRGMv2_3615_11_1
Type: CAZyme
Location: 166 - 1383 (-)
Gene ID: HRGMv2_3615_11_2
Type: TC
Location: 1380 - 2309 (-)
Gene ID: HRGMv2_3615_11_3
Type: TC
Location: 2293 - 3936 (-)
Gene ID: HRGMv2_3615_11_4
Type: TC
Location: 3982 - 5151 (-)
Gene ID: HRGMv2_3615_11_5
Type: pfam
Location: 5217 - 5702 (-)
Gene ID: HRGMv2_3615_11_6
Type: pfam
Location: 5699 - 6172 (-)
Gene ID: HRGMv2_3615_11_7
Type: TC
Location: 6173 - 6952 (-)
Gene ID: HRGMv2_3615_11_8
Type: pfam
Location: 6977 - 7753 (-)
Gene ID: HRGMv2_3615_11_9
Type: TC
Location: 7836 - 9605 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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