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Cluster: HRGMv2_3611_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3611_18 HRGMv2_3611_18_3 5633 7396 + 3.A.1.135.5
TC HRGMv2_3611_18 HRGMv2_3611_18_4 7389 9257 + 3.A.1.135.5
TF HRGMv2_3611_18 HRGMv2_3611_18_5 9519 10193 + Trans_reg_C
STP HRGMv2_3611_18 HRGMv2_3611_18_6 10180 11121 + HATPase_c
TC HRGMv2_3611_18 HRGMv2_3611_18_7 11202 11960 + 3.A.1.134.4
TC HRGMv2_3611_18 HRGMv2_3611_18_8 11947 13863 + 3.A.1.134.10
TC HRGMv2_3611_18 HRGMv2_3611_18_9 13957 15288 + 2.A.66.1.7
pfam HRGMv2_3611_18 HRGMv2_3611_18_10 15694 16368 + DUF6873
pfam HRGMv2_3611_18 HRGMv2_3611_18_11 16445 17731 + HGTP_anticodon | tRNA-synt_His
CAZyme HRGMv2_3611_18 HRGMv2_3611_18_12 17813 19237 - AA7
Gene ID: HRGMv2_3611_18_3
Type: TC
Location: 5633 - 7396 (+)
Gene ID: HRGMv2_3611_18_4
Type: TC
Location: 7389 - 9257 (+)
Gene ID: HRGMv2_3611_18_5
Type: TF
Location: 9519 - 10193 (+)
Gene ID: HRGMv2_3611_18_6
Type: STP
Location: 10180 - 11121 (+)
Gene ID: HRGMv2_3611_18_7
Type: TC
Location: 11202 - 11960 (+)
Gene ID: HRGMv2_3611_18_8
Type: TC
Location: 11947 - 13863 (+)
Gene ID: HRGMv2_3611_18_9
Type: TC
Location: 13957 - 15288 (+)
Gene ID: HRGMv2_3611_18_10
Type: pfam
Location: 15694 - 16368 (+)
Gene ID: HRGMv2_3611_18_11
Type: pfam
Location: 16445 - 17731 (+)
Gene ID: HRGMv2_3611_18_12
Type: CAZyme
Location: 17813 - 19237 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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