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Cluster: HRGMv2_3611_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3611_1 HRGMv2_3611_1_3 1472 2347 - 1.A.23.3.1
pfam HRGMv2_3611_1 HRGMv2_3611_1_4 2348 2854 - Lipase_GDSL | Lipase_GDSL_2
CAZyme HRGMv2_3611_1 HRGMv2_3611_1_5 2854 4845 - GH13_8
pfam HRGMv2_3611_1 HRGMv2_3611_1_6 4862 6922 - GTP_EFTU | EFG_C | MMR_HSR1 | GTP_EFTU_D2 | EFG_IV | EFG_III | EF-G_D2
pfam HRGMv2_3611_1 HRGMv2_3611_1_7 7074 7430 - DUF956
TC HRGMv2_3611_1 HRGMv2_3611_1_8 7432 8364 - 4.A.6.1.15
TC HRGMv2_3611_1 HRGMv2_3611_1_9 8374 9189 - 4.A.6.1.15
TC HRGMv2_3611_1 HRGMv2_3611_1_10 9198 10202 - 4.A.6.1.15
Gene ID: HRGMv2_3611_1_3
Type: TC
Location: 1472 - 2347 (-)
Gene ID: HRGMv2_3611_1_4
Type: pfam
Location: 2348 - 2854 (-)
Gene ID: HRGMv2_3611_1_5
Type: CAZyme
Location: 2854 - 4845 (-)
Gene ID: HRGMv2_3611_1_6
Type: pfam
Location: 4862 - 6922 (-)
Gene ID: HRGMv2_3611_1_7
Type: pfam
Location: 7074 - 7430 (-)
Gene ID: HRGMv2_3611_1_8
Type: TC
Location: 7432 - 8364 (-)
Gene ID: HRGMv2_3611_1_9
Type: TC
Location: 8374 - 9189 (-)
Gene ID: HRGMv2_3611_1_10
Type: TC
Location: 9198 - 10202 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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