Cluster: HRGMv2_3605_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3605
- CGC Family ID: CGCFAM_00209
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3605_9 | HRGMv2_3605_9_43 | 43817 | 45904 | + | 3.A.16.1.1 |
| TF | HRGMv2_3605_9 | HRGMv2_3605_9_44 | 46012 | 46851 | + | HTH_6 |
| CAZyme | HRGMv2_3605_9 | HRGMv2_3605_9_45 | 46944 | 47942 | + | GH170 |
| STP | HRGMv2_3605_9 | HRGMv2_3605_9_46 | 47917 | 48795 | + | SIS |
| TC | HRGMv2_3605_9 | HRGMv2_3605_9_47 | 48792 | 50231 | + | 4.A.1.2.7 |
| TC | HRGMv2_3605_9 | HRGMv2_3605_9_48 | 50564 | 51565 | + | 8.A.21.2.4 |
Gene ID: HRGMv2_3605_9_43
Type: TC
Location: 43817 - 45904 (+)
Type: TC
Location: 43817 - 45904 (+)
Gene ID: HRGMv2_3605_9_44
Type: TF
Location: 46012 - 46851 (+)
Type: TF
Location: 46012 - 46851 (+)
Gene ID: HRGMv2_3605_9_45
Type: CAZyme
Location: 46944 - 47942 (+)
Type: CAZyme
Location: 46944 - 47942 (+)
Gene ID: HRGMv2_3605_9_46
Type: STP
Location: 47917 - 48795 (+)
Type: STP
Location: 47917 - 48795 (+)
Gene ID: HRGMv2_3605_9_47
Type: TC
Location: 48792 - 50231 (+)
Type: TC
Location: 48792 - 50231 (+)
Gene ID: HRGMv2_3605_9_48
Type: TC
Location: 50564 - 51565 (+)
Type: TC
Location: 50564 - 51565 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Peptoniphilaceae
Genus
Anaerococcus
Species
Anaerococcus vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.