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Cluster: HRGMv2_3605_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3605_6 HRGMv2_3605_6_3 1704 2579 - 1.A.23.3.1
pfam HRGMv2_3605_6 HRGMv2_3605_6_4 2572 3090 - Lipase_GDSL | Lipase_GDSL_2
CAZyme HRGMv2_3605_6 HRGMv2_3605_6_5 3090 5081 - GH13_8
pfam HRGMv2_3605_6 HRGMv2_3605_6_6 5108 7168 - GTP_EFTU | EFG_C | MMR_HSR1 | EFG_IV | EFG_III | EF-G_D2
pfam HRGMv2_3605_6 HRGMv2_3605_6_7 7370 7738 - DUF956
TC HRGMv2_3605_6 HRGMv2_3605_6_8 7738 8667 - 4.A.6.1.6
TC HRGMv2_3605_6 HRGMv2_3605_6_9 8676 9485 - 4.A.6.1.15
TC HRGMv2_3605_6 HRGMv2_3605_6_10 9495 10496 - 4.A.6.1.15
Gene ID: HRGMv2_3605_6_3
Type: TC
Location: 1704 - 2579 (-)
Gene ID: HRGMv2_3605_6_4
Type: pfam
Location: 2572 - 3090 (-)
Gene ID: HRGMv2_3605_6_5
Type: CAZyme
Location: 3090 - 5081 (-)
Gene ID: HRGMv2_3605_6_6
Type: pfam
Location: 5108 - 7168 (-)
Gene ID: HRGMv2_3605_6_7
Type: pfam
Location: 7370 - 7738 (-)
Gene ID: HRGMv2_3605_6_8
Type: TC
Location: 7738 - 8667 (-)
Gene ID: HRGMv2_3605_6_9
Type: TC
Location: 8676 - 9485 (-)
Gene ID: HRGMv2_3605_6_10
Type: TC
Location: 9495 - 10496 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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