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Cluster: HRGMv2_3590_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3590_42 HRGMv2_3590_42_3 1644 2114 - CBM25
pfam HRGMv2_3590_42 HRGMv2_3590_42_4 2355 3923 + VanW | G5 | PG_binding_4
TC HRGMv2_3590_42 HRGMv2_3590_42_5 4210 5160 + 1.A.35.3.1
pfam HRGMv2_3590_42 HRGMv2_3590_42_6 5247 6539 - PGA_cap
pfam HRGMv2_3590_42 HRGMv2_3590_42_7 6745 6933 + DUF378
TC HRGMv2_3590_42 HRGMv2_3590_42_8 7070 8653 + 3.A.1.121.4
pfam HRGMv2_3590_42 HRGMv2_3590_42_9 8733 9527 - DUF975
pfam HRGMv2_3590_42 HRGMv2_3590_42_10 9698 11881 + S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5
TC HRGMv2_3590_42 HRGMv2_3590_42_11 11927 12976 - 8.A.59.4.1
Gene ID: HRGMv2_3590_42_3
Type: CAZyme
Location: 1644 - 2114 (-)
Gene ID: HRGMv2_3590_42_4
Type: pfam
Location: 2355 - 3923 (+)
Gene ID: HRGMv2_3590_42_5
Type: TC
Location: 4210 - 5160 (+)
Gene ID: HRGMv2_3590_42_6
Type: pfam
Location: 5247 - 6539 (-)
Gene ID: HRGMv2_3590_42_7
Type: pfam
Location: 6745 - 6933 (+)
Gene ID: HRGMv2_3590_42_8
Type: TC
Location: 7070 - 8653 (+)
Gene ID: HRGMv2_3590_42_9
Type: pfam
Location: 8733 - 9527 (-)
Gene ID: HRGMv2_3590_42_10
Type: pfam
Location: 9698 - 11881 (+)
Gene ID: HRGMv2_3590_42_11
Type: TC
Location: 11927 - 12976 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
CAG-269
→
Species
CAG-269 sp000435535

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3590_42_5 vegan > omnivore 1.93486 0.01195

🧭 Explore Read Mapping of CGC

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