Cluster: HRGMv2_3590_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3590
- CGC Family ID: CGCFAM_04968
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3590_5 | HRGMv2_3590_5_2 | 534 | 998 | + | 9.A.11.1.1 |
| TC | HRGMv2_3590_5 | HRGMv2_3590_5_3 | 1135 | 2136 | + | 9.A.11.1.1 |
| TC | HRGMv2_3590_5 | HRGMv2_3590_5_4 | 2189 | 2623 | + | 9.A.11.1.1 |
| pfam | HRGMv2_3590_5 | HRGMv2_3590_5_5 | 2652 | 3161 | - | Imp-YgjV |
| NULL(UNKNOWN) | HRGMv2_3590_5 | HRGMv2_3590_5_6 | 3704 | 6043 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3590_5 | HRGMv2_3590_5_7 | 6056 | 6994 | - | CE4 |
Gene ID: HRGMv2_3590_5_2
Type: TC
Location: 534 - 998 (+)
Type: TC
Location: 534 - 998 (+)
Gene ID: HRGMv2_3590_5_3
Type: TC
Location: 1135 - 2136 (+)
Type: TC
Location: 1135 - 2136 (+)
Gene ID: HRGMv2_3590_5_4
Type: TC
Location: 2189 - 2623 (+)
Type: TC
Location: 2189 - 2623 (+)
Gene ID: HRGMv2_3590_5_5
Type: pfam
Location: 2652 - 3161 (-)
Type: pfam
Location: 2652 - 3161 (-)
Gene ID: HRGMv2_3590_5_6
Type:
Location: 3704 - 6043 (-)
Type:
Location: 3704 - 6043 (-)
Gene ID: HRGMv2_3590_5_7
Type: CAZyme
Location: 6056 - 6994 (-)
Type: CAZyme
Location: 6056 - 6994 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-269
Species
CAG-269 sp000435535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3590_5_2 | vegan > omnivore | 1.09227 | 0.01195 |