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Cluster: HRGMv2_3585_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3585_10 HRGMv2_3585_10_71 75945 76850 + 3.A.5.1.1
pfam HRGMv2_3585_10 HRGMv2_3585_10_72 76868 79708 + UPF0182
TC HRGMv2_3585_10 HRGMv2_3585_10_73 79776 80369 + 4.F.1.1.8
CAZyme HRGMv2_3585_10 HRGMv2_3585_10_74 80732 83296 + GT35
CAZyme HRGMv2_3585_10 HRGMv2_3585_10_75 83475 84767 + GT4
pfam HRGMv2_3585_10 HRGMv2_3585_10_76 84827 85162 + Com_YlbF
NULL(UNKNOWN) HRGMv2_3585_10 HRGMv2_3585_10_77 85184 85879 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3585_10 HRGMv2_3585_10_78 85994 88222 + 8.A.3.2.1
Gene ID: HRGMv2_3585_10_71
Type: TC
Location: 75945 - 76850 (+)
Gene ID: HRGMv2_3585_10_72
Type: pfam
Location: 76868 - 79708 (+)
Gene ID: HRGMv2_3585_10_73
Type: TC
Location: 79776 - 80369 (+)
Gene ID: HRGMv2_3585_10_74
Type: CAZyme
Location: 80732 - 83296 (+)
Gene ID: HRGMv2_3585_10_75
Type: CAZyme
Location: 83475 - 84767 (+)
Gene ID: HRGMv2_3585_10_76
Type: pfam
Location: 84827 - 85162 (+)
Gene ID: HRGMv2_3585_10_77
Type:
Location: 85184 - 85879 (+)
Gene ID: HRGMv2_3585_10_78
Type: TC
Location: 85994 - 88222 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
Merdicola
→
Species
Merdicola sp905200315

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3585_10_73 vegan > omnivore 2.44916 0.01009

🧭 Explore Read Mapping of CGC

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