Cluster: HRGMv2_3584_CGC4
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 15
- Substrate:
- Genome ID: HRGMv2_3584
- CGC Family ID: CGCFAM_00036
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_275 | 272212 | 273156 | - | GT2 |
| pfam | HRGMv2_3584_1 | HRGMv2_3584_1_276 | 273143 | 273592 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_277 | 273667 | 276930 | - | GH25 |
| pfam | HRGMv2_3584_1 | HRGMv2_3584_1_278 | 277021 | 278127 | - | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_279 | 278144 | 279049 | - | GT2 |
| TC | HRGMv2_3584_1 | HRGMv2_3584_1_280 | 279051 | 280496 | - | 2.A.66.2.16 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_281 | 280506 | 281264 | - | GT111 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_282 | 281280 | 282311 | - | GT2 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_283 | 282329 | 283240 | - | GT2 |
| pfam | HRGMv2_3584_1 | HRGMv2_3584_1_284 | 283227 | 283577 | - | DUF2304 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_285 | 283590 | 285722 | - | GT2 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_286 | 285784 | 287583 | - | GT32 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_287 | 287598 | 288692 | - | GT2 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_288 | 288770 | 289651 | - | GT2 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_289 | 289760 | 290866 | - | GT4 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_290 | 291030 | 291962 | - | GT2 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_291 | 291955 | 292998 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_3584_1 | HRGMv2_3584_1_292 | 292988 | 293206 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_293 | 293213 | 294151 | - | GT2 |
| pfam | HRGMv2_3584_1 | HRGMv2_3584_1_294 | 294157 | 294951 | - | Glyphos_transf |
| NULL(UNKNOWN) | HRGMv2_3584_1 | HRGMv2_3584_1_295 | 295040 | 295354 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3584_1 | HRGMv2_3584_1_296 | 295366 | 296142 | - | 3.A.1.103.4 |
| TC | HRGMv2_3584_1 | HRGMv2_3584_1_297 | 296157 | 296900 | - | 3.A.1.103.4 |
| CAZyme | HRGMv2_3584_1 | HRGMv2_3584_1_298 | 296966 | 298051 | - | GT4 |
Gene ID: HRGMv2_3584_1_275
Type: CAZyme
Location: 272212 - 273156 (-)
Type: CAZyme
Location: 272212 - 273156 (-)
Gene ID: HRGMv2_3584_1_276
Type: pfam
Location: 273143 - 273592 (-)
Type: pfam
Location: 273143 - 273592 (-)
Gene ID: HRGMv2_3584_1_277
Type: CAZyme
Location: 273667 - 276930 (-)
Type: CAZyme
Location: 273667 - 276930 (-)
Gene ID: HRGMv2_3584_1_278
Type: pfam
Location: 277021 - 278127 (-)
Type: pfam
Location: 277021 - 278127 (-)
Gene ID: HRGMv2_3584_1_279
Type: CAZyme
Location: 278144 - 279049 (-)
Type: CAZyme
Location: 278144 - 279049 (-)
Gene ID: HRGMv2_3584_1_280
Type: TC
Location: 279051 - 280496 (-)
Type: TC
Location: 279051 - 280496 (-)
Gene ID: HRGMv2_3584_1_281
Type: CAZyme
Location: 280506 - 281264 (-)
Type: CAZyme
Location: 280506 - 281264 (-)
Gene ID: HRGMv2_3584_1_282
Type: CAZyme
Location: 281280 - 282311 (-)
Type: CAZyme
Location: 281280 - 282311 (-)
Gene ID: HRGMv2_3584_1_283
Type: CAZyme
Location: 282329 - 283240 (-)
Type: CAZyme
Location: 282329 - 283240 (-)
Gene ID: HRGMv2_3584_1_284
Type: pfam
Location: 283227 - 283577 (-)
Type: pfam
Location: 283227 - 283577 (-)
Gene ID: HRGMv2_3584_1_285
Type: CAZyme
Location: 283590 - 285722 (-)
Type: CAZyme
Location: 283590 - 285722 (-)
Gene ID: HRGMv2_3584_1_286
Type: CAZyme
Location: 285784 - 287583 (-)
Type: CAZyme
Location: 285784 - 287583 (-)
Gene ID: HRGMv2_3584_1_287
Type: CAZyme
Location: 287598 - 288692 (-)
Type: CAZyme
Location: 287598 - 288692 (-)
Gene ID: HRGMv2_3584_1_288
Type: CAZyme
Location: 288770 - 289651 (-)
Type: CAZyme
Location: 288770 - 289651 (-)
Gene ID: HRGMv2_3584_1_289
Type: CAZyme
Location: 289760 - 290866 (-)
Type: CAZyme
Location: 289760 - 290866 (-)
Gene ID: HRGMv2_3584_1_290
Type: CAZyme
Location: 291030 - 291962 (-)
Type: CAZyme
Location: 291030 - 291962 (-)
Gene ID: HRGMv2_3584_1_291
Type: CAZyme
Location: 291955 - 292998 (-)
Type: CAZyme
Location: 291955 - 292998 (-)
Gene ID: HRGMv2_3584_1_292
Type:
Location: 292988 - 293206 (-)
Type:
Location: 292988 - 293206 (-)
Gene ID: HRGMv2_3584_1_293
Type: CAZyme
Location: 293213 - 294151 (-)
Type: CAZyme
Location: 293213 - 294151 (-)
Gene ID: HRGMv2_3584_1_294
Type: pfam
Location: 294157 - 294951 (-)
Type: pfam
Location: 294157 - 294951 (-)
Gene ID: HRGMv2_3584_1_295
Type:
Location: 295040 - 295354 (-)
Type:
Location: 295040 - 295354 (-)
Gene ID: HRGMv2_3584_1_296
Type: TC
Location: 295366 - 296142 (-)
Type: TC
Location: 295366 - 296142 (-)
Gene ID: HRGMv2_3584_1_297
Type: TC
Location: 296157 - 296900 (-)
Type: TC
Location: 296157 - 296900 (-)
Gene ID: HRGMv2_3584_1_298
Type: CAZyme
Location: 296966 - 298051 (-)
Type: CAZyme
Location: 296966 - 298051 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
Merdicola
Species
Merdicola sp900555085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.