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Cluster: HRGMv2_3584_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3584_4 HRGMv2_3584_4_11 7522 8367 - 2.A.119.2.2
pfam HRGMv2_3584_4 HRGMv2_3584_4_12 8573 9430 - Patatin
pfam HRGMv2_3584_4 HRGMv2_3584_4_13 9606 9893 + Ribosomal_S6
TC HRGMv2_3584_4 HRGMv2_3584_4_14 9932 10348 + 3.A.7.19.1
pfam HRGMv2_3584_4 HRGMv2_3584_4_15 10371 10646 + Ribosomal_S18
CAZyme HRGMv2_3584_4 HRGMv2_3584_4_16 10760 12229 + GH13_5
pfam HRGMv2_3584_4 HRGMv2_3584_4_17 12608 12910 - GIY-YIG
TC HRGMv2_3584_4 HRGMv2_3584_4_18 13063 13662 - 3.A.11.1.2
Gene ID: HRGMv2_3584_4_11
Type: TC
Location: 7522 - 8367 (-)
Gene ID: HRGMv2_3584_4_12
Type: pfam
Location: 8573 - 9430 (-)
Gene ID: HRGMv2_3584_4_13
Type: pfam
Location: 9606 - 9893 (+)
Gene ID: HRGMv2_3584_4_14
Type: TC
Location: 9932 - 10348 (+)
Gene ID: HRGMv2_3584_4_15
Type: pfam
Location: 10371 - 10646 (+)
Gene ID: HRGMv2_3584_4_16
Type: CAZyme
Location: 10760 - 12229 (+)
Gene ID: HRGMv2_3584_4_17
Type: pfam
Location: 12608 - 12910 (-)
Gene ID: HRGMv2_3584_4_18
Type: TC
Location: 13063 - 13662 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
Merdicola
→
Species
Merdicola sp900555085

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3584_4_15 vegan > omnivore 2.10091 0.01867
HRGMv2_3584_4_17 vegan > omnivore 2.18960 0.01867

🧭 Explore Read Mapping of CGC

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