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Cluster: HRGMv2_3567_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3567_15 HRGMv2_3567_15_16 10902 11882 + 9.B.146.1.6
TC HRGMv2_3567_15 HRGMv2_3567_15_17 12022 12801 + 2.A.103.1.3
TC HRGMv2_3567_15 HRGMv2_3567_15_18 12773 13153 + 2.A.103.1.3
pfam HRGMv2_3567_15 HRGMv2_3567_15_19 13279 13413 + Glyco_transf_28
CAZyme HRGMv2_3567_15 HRGMv2_3567_15_20 13604 14395 + GT28
TC HRGMv2_3567_15 HRGMv2_3567_15_21 14400 15782 + 2.A.21.9.2
NULL(UNKNOWN) HRGMv2_3567_15 HRGMv2_3567_15_22 15915 16121 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3567_15 HRGMv2_3567_15_23 16087 16815 + 2.A.119.2.2
Gene ID: HRGMv2_3567_15_16
Type: TC
Location: 10902 - 11882 (+)
Gene ID: HRGMv2_3567_15_17
Type: TC
Location: 12022 - 12801 (+)
Gene ID: HRGMv2_3567_15_18
Type: TC
Location: 12773 - 13153 (+)
Gene ID: HRGMv2_3567_15_19
Type: pfam
Location: 13279 - 13413 (+)
Gene ID: HRGMv2_3567_15_20
Type: CAZyme
Location: 13604 - 14395 (+)
Gene ID: HRGMv2_3567_15_21
Type: TC
Location: 14400 - 15782 (+)
Gene ID: HRGMv2_3567_15_22
Type:
Location: 15915 - 16121 (+)
Gene ID: HRGMv2_3567_15_23
Type: TC
Location: 16087 - 16815 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
CAG-269
→
Species
CAG-269 sp900556345

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3567_15_19 vegan > omnivore 2.66506 0.04420

🧭 Explore Read Mapping of CGC

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