Cluster: HRGMv2_3565_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_3565
- CGC Family ID: CGCFAM_01049
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_101 | 73130 | 74224 | + | GT4 |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_102 | 74229 | 75176 | + | GT2 |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_103 | 75187 | 76149 | + | GT2 |
| pfam | HRGMv2_3565_4 | HRGMv2_3565_4_104 | 76168 | 77583 | + | O-antigen_lig |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_105 | 77585 | 78688 | + | GT4 |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_106 | 78685 | 79596 | + | GT2 |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_107 | 79584 | 81884 | + | GT4 |
| TC | HRGMv2_3565_4 | HRGMv2_3565_4_108 | 81951 | 82697 | + | 3.A.1.103.4 |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_109 | 82709 | 84997 | + | GT2 | GT4 |
| TC | HRGMv2_3565_4 | HRGMv2_3565_4_110 | 84997 | 85773 | + | 3.A.1.103.4 |
| pfam | HRGMv2_3565_4 | HRGMv2_3565_4_111 | 85795 | 87267 | + | PMT_2 |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_112 | 87303 | 88238 | + | GT2 |
| TC | HRGMv2_3565_4 | HRGMv2_3565_4_113 | 88261 | 89343 | + | 9.B.146.1.1 |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_114 | 89409 | 90344 | + | GT2 |
| STP | HRGMv2_3565_4 | HRGMv2_3565_4_115 | 90359 | 91363 | + | AAA |
| CAZyme | HRGMv2_3565_4 | HRGMv2_3565_4_116 | 91373 | 92317 | + | GT2 |
Gene ID: HRGMv2_3565_4_101
Type: CAZyme
Location: 73130 - 74224 (+)
Type: CAZyme
Location: 73130 - 74224 (+)
Gene ID: HRGMv2_3565_4_102
Type: CAZyme
Location: 74229 - 75176 (+)
Type: CAZyme
Location: 74229 - 75176 (+)
Gene ID: HRGMv2_3565_4_103
Type: CAZyme
Location: 75187 - 76149 (+)
Type: CAZyme
Location: 75187 - 76149 (+)
Gene ID: HRGMv2_3565_4_104
Type: pfam
Location: 76168 - 77583 (+)
Type: pfam
Location: 76168 - 77583 (+)
Gene ID: HRGMv2_3565_4_105
Type: CAZyme
Location: 77585 - 78688 (+)
Type: CAZyme
Location: 77585 - 78688 (+)
Gene ID: HRGMv2_3565_4_106
Type: CAZyme
Location: 78685 - 79596 (+)
Type: CAZyme
Location: 78685 - 79596 (+)
Gene ID: HRGMv2_3565_4_107
Type: CAZyme
Location: 79584 - 81884 (+)
Type: CAZyme
Location: 79584 - 81884 (+)
Gene ID: HRGMv2_3565_4_108
Type: TC
Location: 81951 - 82697 (+)
Type: TC
Location: 81951 - 82697 (+)
Gene ID: HRGMv2_3565_4_109
Type: CAZyme
Location: 82709 - 84997 (+)
Type: CAZyme
Location: 82709 - 84997 (+)
Gene ID: HRGMv2_3565_4_110
Type: TC
Location: 84997 - 85773 (+)
Type: TC
Location: 84997 - 85773 (+)
Gene ID: HRGMv2_3565_4_111
Type: pfam
Location: 85795 - 87267 (+)
Type: pfam
Location: 85795 - 87267 (+)
Gene ID: HRGMv2_3565_4_112
Type: CAZyme
Location: 87303 - 88238 (+)
Type: CAZyme
Location: 87303 - 88238 (+)
Gene ID: HRGMv2_3565_4_113
Type: TC
Location: 88261 - 89343 (+)
Type: TC
Location: 88261 - 89343 (+)
Gene ID: HRGMv2_3565_4_114
Type: CAZyme
Location: 89409 - 90344 (+)
Type: CAZyme
Location: 89409 - 90344 (+)
Gene ID: HRGMv2_3565_4_115
Type: STP
Location: 90359 - 91363 (+)
Type: STP
Location: 90359 - 91363 (+)
Gene ID: HRGMv2_3565_4_116
Type: CAZyme
Location: 91373 - 92317 (+)
Type: CAZyme
Location: 91373 - 92317 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-492
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.