Cluster: HRGMv2_3558_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3558
- CGC Family ID: CGCFAM_10392
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3558_5 | HRGMv2_3558_5_27 | 24457 | 25446 | + | 1.A.33.1.5 |
| TC | HRGMv2_3558_5 | HRGMv2_3558_5_28 | 25561 | 27426 | + | 4.C.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_3558_5 | HRGMv2_3558_5_29 | 27537 | 28424 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3558_5 | HRGMv2_3558_5_30 | 29183 | 29566 | + | PDDEXK_5 |
| CAZyme | HRGMv2_3558_5 | HRGMv2_3558_5_31 | 29689 | 30420 | + | GT51 |
| TC | HRGMv2_3558_5 | HRGMv2_3558_5_32 | 30604 | 33267 | + | 3.A.3.4.1 |
| CAZyme | HRGMv2_3558_5 | HRGMv2_3558_5_33 | 33403 | 35970 | + | GT35 |
| pfam | HRGMv2_3558_5 | HRGMv2_3558_5_34 | 36313 | 38556 | + | ABC_tran |
| TF | HRGMv2_3558_5 | HRGMv2_3558_5_35 | 38695 | 39069 | + | GntR |
| TC | HRGMv2_3558_5 | HRGMv2_3558_5_36 | 39075 | 39932 | + | 3.A.1.149.1 |
Gene ID: HRGMv2_3558_5_27
Type: TC
Location: 24457 - 25446 (+)
Type: TC
Location: 24457 - 25446 (+)
Gene ID: HRGMv2_3558_5_28
Type: TC
Location: 25561 - 27426 (+)
Type: TC
Location: 25561 - 27426 (+)
Gene ID: HRGMv2_3558_5_29
Type:
Location: 27537 - 28424 (+)
Type:
Location: 27537 - 28424 (+)
Gene ID: HRGMv2_3558_5_30
Type: pfam
Location: 29183 - 29566 (+)
Type: pfam
Location: 29183 - 29566 (+)
Gene ID: HRGMv2_3558_5_31
Type: CAZyme
Location: 29689 - 30420 (+)
Type: CAZyme
Location: 29689 - 30420 (+)
Gene ID: HRGMv2_3558_5_32
Type: TC
Location: 30604 - 33267 (+)
Type: TC
Location: 30604 - 33267 (+)
Gene ID: HRGMv2_3558_5_33
Type: CAZyme
Location: 33403 - 35970 (+)
Type: CAZyme
Location: 33403 - 35970 (+)
Gene ID: HRGMv2_3558_5_34
Type: pfam
Location: 36313 - 38556 (+)
Type: pfam
Location: 36313 - 38556 (+)
Gene ID: HRGMv2_3558_5_35
Type: TF
Location: 38695 - 39069 (+)
Type: TF
Location: 38695 - 39069 (+)
Gene ID: HRGMv2_3558_5_36
Type: TC
Location: 39075 - 39932 (+)
Type: TC
Location: 39075 - 39932 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-492
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.