Cluster: HRGMv2_3555_CGC5
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_3555
- CGC Family ID: CGCFAM_01049
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_18 | 19612 | 20559 | - | GT2 |
| TC | HRGMv2_3555_9 | HRGMv2_3555_9_19 | 20586 | 21719 | - | 9.B.146.1.1 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_20 | 21894 | 22802 | - | GT2 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_21 | 22870 | 24123 | - | GT4 |
| pfam | HRGMv2_3555_9 | HRGMv2_3555_9_22 | 24120 | 25652 | - | O-antigen_lig |
| TC | HRGMv2_3555_9 | HRGMv2_3555_9_23 | 25789 | 26562 | - | 3.A.1.103.1 |
| TC | HRGMv2_3555_9 | HRGMv2_3555_9_24 | 26563 | 27306 | - | 3.A.1.103.4 |
| pfam | HRGMv2_3555_9 | HRGMv2_3555_9_25 | 27392 | 28267 | - | Cadherin-like | Cadherin-like |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_26 | 28378 | 31152 | - | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_27 | 31315 | 32253 | - | GT2 |
| pfam | HRGMv2_3555_9 | HRGMv2_3555_9_28 | 32219 | 34009 | - | DUF6020 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_29 | 34078 | 35034 | - | GT2 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_30 | 35054 | 35998 | - | GT2 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_31 | 36069 | 37877 | - | GT32 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_32 | 37891 | 38973 | - | GT2 |
| CAZyme | HRGMv2_3555_9 | HRGMv2_3555_9_33 | 39054 | 40169 | - | GT4 |
Gene ID: HRGMv2_3555_9_18
Type: CAZyme
Location: 19612 - 20559 (-)
Type: CAZyme
Location: 19612 - 20559 (-)
Gene ID: HRGMv2_3555_9_19
Type: TC
Location: 20586 - 21719 (-)
Type: TC
Location: 20586 - 21719 (-)
Gene ID: HRGMv2_3555_9_20
Type: CAZyme
Location: 21894 - 22802 (-)
Type: CAZyme
Location: 21894 - 22802 (-)
Gene ID: HRGMv2_3555_9_21
Type: CAZyme
Location: 22870 - 24123 (-)
Type: CAZyme
Location: 22870 - 24123 (-)
Gene ID: HRGMv2_3555_9_22
Type: pfam
Location: 24120 - 25652 (-)
Type: pfam
Location: 24120 - 25652 (-)
Gene ID: HRGMv2_3555_9_23
Type: TC
Location: 25789 - 26562 (-)
Type: TC
Location: 25789 - 26562 (-)
Gene ID: HRGMv2_3555_9_24
Type: TC
Location: 26563 - 27306 (-)
Type: TC
Location: 26563 - 27306 (-)
Gene ID: HRGMv2_3555_9_25
Type: pfam
Location: 27392 - 28267 (-)
Type: pfam
Location: 27392 - 28267 (-)
Gene ID: HRGMv2_3555_9_26
Type: CAZyme
Location: 28378 - 31152 (-)
Type: CAZyme
Location: 28378 - 31152 (-)
Gene ID: HRGMv2_3555_9_27
Type: CAZyme
Location: 31315 - 32253 (-)
Type: CAZyme
Location: 31315 - 32253 (-)
Gene ID: HRGMv2_3555_9_28
Type: pfam
Location: 32219 - 34009 (-)
Type: pfam
Location: 32219 - 34009 (-)
Gene ID: HRGMv2_3555_9_29
Type: CAZyme
Location: 34078 - 35034 (-)
Type: CAZyme
Location: 34078 - 35034 (-)
Gene ID: HRGMv2_3555_9_30
Type: CAZyme
Location: 35054 - 35998 (-)
Type: CAZyme
Location: 35054 - 35998 (-)
Gene ID: HRGMv2_3555_9_31
Type: CAZyme
Location: 36069 - 37877 (-)
Type: CAZyme
Location: 36069 - 37877 (-)
Gene ID: HRGMv2_3555_9_32
Type: CAZyme
Location: 37891 - 38973 (-)
Type: CAZyme
Location: 37891 - 38973 (-)
Gene ID: HRGMv2_3555_9_33
Type: CAZyme
Location: 39054 - 40169 (-)
Type: CAZyme
Location: 39054 - 40169 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-245
Species
CAG-245 sp900552135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.