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Cluster: HRGMv2_3546_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3546_2 HRGMv2_3546_2_156 183209 190651 + 4.C.1.1.7
STP HRGMv2_3546_2 HRGMv2_3546_2_157 190644 192458 + HATPase_c | HisKA | PAS
TC HRGMv2_3546_2 HRGMv2_3546_2_158 192591 193664 + 8.A.59.4.1
pfam HRGMv2_3546_2 HRGMv2_3546_2_159 193708 195888 - S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5
pfam HRGMv2_3546_2 HRGMv2_3546_2_160 196068 196865 + DUF975
TC HRGMv2_3546_2 HRGMv2_3546_2_161 196911 198494 - 3.A.1.121.4
pfam HRGMv2_3546_2 HRGMv2_3546_2_162 198631 198819 - DUF378
pfam HRGMv2_3546_2 HRGMv2_3546_2_163 198936 200159 + PGA_cap
TC HRGMv2_3546_2 HRGMv2_3546_2_164 200193 201143 - 1.A.35.3.1
pfam HRGMv2_3546_2 HRGMv2_3546_2_165 201420 203261 - VanW | G5 | PG_binding_4
CAZyme HRGMv2_3546_2 HRGMv2_3546_2_166 203492 203959 + CBM25
Gene ID: HRGMv2_3546_2_156
Type: TC
Location: 183209 - 190651 (+)
Gene ID: HRGMv2_3546_2_157
Type: STP
Location: 190644 - 192458 (+)
Gene ID: HRGMv2_3546_2_158
Type: TC
Location: 192591 - 193664 (+)
Gene ID: HRGMv2_3546_2_159
Type: pfam
Location: 193708 - 195888 (-)
Gene ID: HRGMv2_3546_2_160
Type: pfam
Location: 196068 - 196865 (+)
Gene ID: HRGMv2_3546_2_161
Type: TC
Location: 196911 - 198494 (-)
Gene ID: HRGMv2_3546_2_162
Type: pfam
Location: 198631 - 198819 (-)
Gene ID: HRGMv2_3546_2_163
Type: pfam
Location: 198936 - 200159 (+)
Gene ID: HRGMv2_3546_2_164
Type: TC
Location: 200193 - 201143 (-)
Gene ID: HRGMv2_3546_2_165
Type: pfam
Location: 201420 - 203261 (-)
Gene ID: HRGMv2_3546_2_166
Type: CAZyme
Location: 203492 - 203959 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
CAG-269
→
Species
CAG-269 sp934130705

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3546_2_164 vegan > omnivore 2.25518 0.00397
HRGMv2_3546_2_164 vegetarian > omnivore 1.37538 0.03161

🧭 Explore Read Mapping of CGC

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