Cluster: HRGMv2_3546_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3546
- CGC Family ID: CGCFAM_00713
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3546_1 | HRGMv2_3546_1_316 | 322489 | 323760 | - | GT2 |
| pfam | HRGMv2_3546_1 | HRGMv2_3546_1_317 | 323938 | 324927 | + | Semialdhyde_dh | Semialdhyde_dhC |
| pfam | HRGMv2_3546_1 | HRGMv2_3546_1_318 | 324978 | 325856 | - | PDDEXK_2 |
| TC | HRGMv2_3546_1 | HRGMv2_3546_1_319 | 326340 | 328313 | + | 3.A.3.4.1 |
| TC | HRGMv2_3546_1 | HRGMv2_3546_1_320 | 328333 | 328938 | + | 3.A.3.4.1 |
Gene ID: HRGMv2_3546_1_316
Type: CAZyme
Location: 322489 - 323760 (-)
Type: CAZyme
Location: 322489 - 323760 (-)
Gene ID: HRGMv2_3546_1_317
Type: pfam
Location: 323938 - 324927 (+)
Type: pfam
Location: 323938 - 324927 (+)
Gene ID: HRGMv2_3546_1_318
Type: pfam
Location: 324978 - 325856 (-)
Type: pfam
Location: 324978 - 325856 (-)
Gene ID: HRGMv2_3546_1_319
Type: TC
Location: 326340 - 328313 (+)
Type: TC
Location: 326340 - 328313 (+)
Gene ID: HRGMv2_3546_1_320
Type: TC
Location: 328333 - 328938 (+)
Type: TC
Location: 328333 - 328938 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-269
Species
CAG-269 sp934130705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3546_1_317 | vegan > omnivore | 1.24675 | 0.00397 |