Cluster: HRGMv2_3543_CGC9
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3543
- CGC Family ID: CGCFAM_10389
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3543_3 | HRGMv2_3543_3_211 | 208456 | 209364 | + | 3.A.1.121.4 |
| pfam | HRGMv2_3543_3 | HRGMv2_3543_3_212 | 209673 | 210656 | - | Phage_integrase |
| CAZyme | HRGMv2_3543_3 | HRGMv2_3543_3_213 | 211096 | 213633 | + | GT51 |
| CAZyme | HRGMv2_3543_3 | HRGMv2_3543_3_214 | 213719 | 214807 | + | GT4 |
| CAZyme | HRGMv2_3543_3 | HRGMv2_3543_3_215 | 214815 | 215768 | + | GT2 |
| CAZyme | HRGMv2_3543_3 | HRGMv2_3543_3_216 | 215976 | 216962 | + | GT2 |
| pfam | HRGMv2_3543_3 | HRGMv2_3543_3_217 | 216985 | 218397 | + | O-antigen_lig |
| CAZyme | HRGMv2_3543_3 | HRGMv2_3543_3_218 | 218394 | 219524 | + | GT4 |
| pfam | HRGMv2_3543_3 | HRGMv2_3543_3_219 | 219706 | 220650 | + | Fic | Virulence_RhuM |
| CAZyme | HRGMv2_3543_3 | HRGMv2_3543_3_220 | 220803 | 223058 | + | GT2 | GT4 |
Gene ID: HRGMv2_3543_3_211
Type: TC
Location: 208456 - 209364 (+)
Type: TC
Location: 208456 - 209364 (+)
Gene ID: HRGMv2_3543_3_212
Type: pfam
Location: 209673 - 210656 (-)
Type: pfam
Location: 209673 - 210656 (-)
Gene ID: HRGMv2_3543_3_213
Type: CAZyme
Location: 211096 - 213633 (+)
Type: CAZyme
Location: 211096 - 213633 (+)
Gene ID: HRGMv2_3543_3_214
Type: CAZyme
Location: 213719 - 214807 (+)
Type: CAZyme
Location: 213719 - 214807 (+)
Gene ID: HRGMv2_3543_3_215
Type: CAZyme
Location: 214815 - 215768 (+)
Type: CAZyme
Location: 214815 - 215768 (+)
Gene ID: HRGMv2_3543_3_216
Type: CAZyme
Location: 215976 - 216962 (+)
Type: CAZyme
Location: 215976 - 216962 (+)
Gene ID: HRGMv2_3543_3_217
Type: pfam
Location: 216985 - 218397 (+)
Type: pfam
Location: 216985 - 218397 (+)
Gene ID: HRGMv2_3543_3_218
Type: CAZyme
Location: 218394 - 219524 (+)
Type: CAZyme
Location: 218394 - 219524 (+)
Gene ID: HRGMv2_3543_3_219
Type: pfam
Location: 219706 - 220650 (+)
Type: pfam
Location: 219706 - 220650 (+)
Gene ID: HRGMv2_3543_3_220
Type: CAZyme
Location: 220803 - 223058 (+)
Type: CAZyme
Location: 220803 - 223058 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-269
Species
CAG-269 sp900553985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3543_3_219 | vegan > omnivore | 1.76881 | 0.00958 |