Cluster: HRGMv2_3543_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3543
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3543_3 | HRGMv2_3543_3_17 | 15255 | 17879 | + | GT51 |
| pfam | HRGMv2_3543_3 | HRGMv2_3543_3_18 | 18047 | 19441 | + | tRNA-synt_1e | tRNA-synt_1g | CysS_C |
| pfam | HRGMv2_3543_3 | HRGMv2_3543_3_19 | 19553 | 20554 | + | adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| TC | HRGMv2_3543_3 | HRGMv2_3543_3_20 | 20807 | 21202 | - | 9.A.11.1.1 |
| pfam | HRGMv2_3543_3 | HRGMv2_3543_3_21 | 21209 | 22219 | - | SpoVAD |
| TC | HRGMv2_3543_3 | HRGMv2_3543_3_22 | 22295 | 22762 | - | 9.A.11.1.1 |
Gene ID: HRGMv2_3543_3_17
Type: CAZyme
Location: 15255 - 17879 (+)
Type: CAZyme
Location: 15255 - 17879 (+)
Gene ID: HRGMv2_3543_3_18
Type: pfam
Location: 18047 - 19441 (+)
Type: pfam
Location: 18047 - 19441 (+)
Gene ID: HRGMv2_3543_3_19
Type: pfam
Location: 19553 - 20554 (+)
Type: pfam
Location: 19553 - 20554 (+)
Gene ID: HRGMv2_3543_3_20
Type: TC
Location: 20807 - 21202 (-)
Type: TC
Location: 20807 - 21202 (-)
Gene ID: HRGMv2_3543_3_21
Type: pfam
Location: 21209 - 22219 (-)
Type: pfam
Location: 21209 - 22219 (-)
Gene ID: HRGMv2_3543_3_22
Type: TC
Location: 22295 - 22762 (-)
Type: TC
Location: 22295 - 22762 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
TANB77
Family
CAG-508
Genus
CAG-269
Species
CAG-269 sp900553985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3543_3_21 | vegan > omnivore | 1.76534 | 0.00958 |
| HRGMv2_3543_3_22 | vegan > omnivore | 1.97622 | 0.00958 |