dbCAN HGM

Cluster: HRGMv2_3528_CGC9

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_3528_11	HRGMv2_3528_11_14	8774	9589	+	3.A.15.1.1
NULL(UNKNOWN)	HRGMv2_3528_11	HRGMv2_3528_11_15	9602	10039	+	NULL(UNKNOWN) [View Structural Homologs]
NULL(UNKNOWN)	HRGMv2_3528_11	HRGMv2_3528_11_16	10042	10482	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_3528_11	HRGMv2_3528_11_17	10571	12205	+	3.A.11.1.3
TC	HRGMv2_3528_11	HRGMv2_3528_11_18	12225	13322	+	3.A.15.2.1
pfam	HRGMv2_3528_11	HRGMv2_3528_11_19	13346	14695	+	T2SSF \| T2SSF
pfam	HRGMv2_3528_11	HRGMv2_3528_11_20	14746	15648	+	ROK
CAZyme	HRGMv2_3528_11	HRGMv2_3528_11_21	15719	16978	-	CBM50 \| GH25

Gene ID: HRGMv2_3528_11_14
Type: TC
Location: 8774 - 9589 (+)

Gene ID: HRGMv2_3528_11_15
Type:
Location: 9602 - 10039 (+)

Gene ID: HRGMv2_3528_11_16
Type:
Location: 10042 - 10482 (+)

Gene ID: HRGMv2_3528_11_17
Type: TC
Location: 10571 - 12205 (+)

Gene ID: HRGMv2_3528_11_18
Type: TC
Location: 12225 - 13322 (+)

Gene ID: HRGMv2_3528_11_19
Type: pfam
Location: 13346 - 14695 (+)

Gene ID: HRGMv2_3528_11_20
Type: pfam
Location: 14746 - 15648 (+)

Gene ID: HRGMv2_3528_11_21
Type: CAZyme
Location: 15719 - 16978 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_3528_11_17	vegan > omnivore	1.41378	0.00581
HRGMv2_3528_11_18	vegan > omnivore	1.35597	0.00581
HRGMv2_3528_11_19	vegan > omnivore	1.16779	0.00581
HRGMv2_3528_11_21	vegan > omnivore	3.08985	0.00581
HRGMv2_3528_11_21	vegetarian > omnivore	1.45201	0.03130