dbCAN HGM

Cluster: HRGMv2_3528_CGC11

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_3528_17	HRGMv2_3528_17_5	2512	6798	+	4.C.1.1.7
NULL(UNKNOWN)	HRGMv2_3528_17	HRGMv2_3528_17_6	6804	7013	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_3528_17	HRGMv2_3528_17_7	6955	8856	+	2.A.21.9.1
TC	HRGMv2_3528_17	HRGMv2_3528_17_8	9071	10138	+	8.A.59.4.1
pfam	HRGMv2_3528_17	HRGMv2_3528_17_9	10364	12547	-	S1 \| Tex_N \| HHH_3 \| HHH_7 \| Tex_YqgF \| HHH_9 \| Tex_central_region \| S1_RRP5
TC	HRGMv2_3528_17	HRGMv2_3528_17_10	12600	14183	-	3.A.1.121.4
pfam	HRGMv2_3528_17	HRGMv2_3528_17_11	14374	14562	-	DUF378
TC	HRGMv2_3528_17	HRGMv2_3528_17_12	14656	15612	-	1.A.35.3.4
NULL(UNKNOWN)	HRGMv2_3528_17	HRGMv2_3528_17_13	15692	16234	-	NULL(UNKNOWN) [View Structural Homologs]
pfam	HRGMv2_3528_17	HRGMv2_3528_17_14	16620	18437	-	VanW \| G5 \| PG_binding_4
CAZyme	HRGMv2_3528_17	HRGMv2_3528_17_15	18674	19147	+	CBM25

Gene ID: HRGMv2_3528_17_5
Type: TC
Location: 2512 - 6798 (+)

Gene ID: HRGMv2_3528_17_6
Type:
Location: 6804 - 7013 (+)

Gene ID: HRGMv2_3528_17_7
Type: TC
Location: 6955 - 8856 (+)

Gene ID: HRGMv2_3528_17_8
Type: TC
Location: 9071 - 10138 (+)

Gene ID: HRGMv2_3528_17_9
Type: pfam
Location: 10364 - 12547 (-)

Gene ID: HRGMv2_3528_17_10
Type: TC
Location: 12600 - 14183 (-)

Gene ID: HRGMv2_3528_17_11
Type: pfam
Location: 14374 - 14562 (-)

Gene ID: HRGMv2_3528_17_12
Type: TC
Location: 14656 - 15612 (-)

Gene ID: HRGMv2_3528_17_13
Type:
Location: 15692 - 16234 (-)

Gene ID: HRGMv2_3528_17_14
Type: pfam
Location: 16620 - 18437 (-)

Gene ID: HRGMv2_3528_17_15
Type: CAZyme
Location: 18674 - 19147 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_3528_17_11	vegan > omnivore	2.04839	0.00581
HRGMv2_3528_17_11	vegetarian > omnivore	2.48554	0.03130
HRGMv2_3528_17_12	vegan > omnivore	2.54771	0.00581
HRGMv2_3528_17_12	vegetarian > omnivore	1.83191	0.03130

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_3528_17_10	vegan > omnivore	1.24700	0.00116