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Cluster: HRGMv2_3517_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3517_1 HRGMv2_3517_1_799 782018 783103 + 9.B.146.1.4
pfam HRGMv2_3517_1 HRGMv2_3517_1_800 783096 784445 + O-antigen_lig | O-antigen_lig
CAZyme HRGMv2_3517_1 HRGMv2_3517_1_801 784438 785571 + GT4
CAZyme HRGMv2_3517_1 HRGMv2_3517_1_802 785582 786541 + GT2
TC HRGMv2_3517_1 HRGMv2_3517_1_803 786552 788036 + 2.A.66.1.40
CAZyme HRGMv2_3517_1 HRGMv2_3517_1_804 788038 789222 + GT2
CAZyme HRGMv2_3517_1 HRGMv2_3517_1_805 789234 789956 + GT32
CAZyme HRGMv2_3517_1 HRGMv2_3517_1_806 789953 790669 + GT26
pfam HRGMv2_3517_1 HRGMv2_3517_1_807 790685 791794 + Epimerase_2
CAZyme HRGMv2_3517_1 HRGMv2_3517_1_808 791803 792738 + GT2
Gene ID: HRGMv2_3517_1_799
Type: TC
Location: 782018 - 783103 (+)
Gene ID: HRGMv2_3517_1_800
Type: pfam
Location: 783096 - 784445 (+)
Gene ID: HRGMv2_3517_1_801
Type: CAZyme
Location: 784438 - 785571 (+)
Gene ID: HRGMv2_3517_1_802
Type: CAZyme
Location: 785582 - 786541 (+)
Gene ID: HRGMv2_3517_1_803
Type: TC
Location: 786552 - 788036 (+)
Gene ID: HRGMv2_3517_1_804
Type: CAZyme
Location: 788038 - 789222 (+)
Gene ID: HRGMv2_3517_1_805
Type: CAZyme
Location: 789234 - 789956 (+)
Gene ID: HRGMv2_3517_1_806
Type: CAZyme
Location: 789953 - 790669 (+)
Gene ID: HRGMv2_3517_1_807
Type: pfam
Location: 790685 - 791794 (+)
Gene ID: HRGMv2_3517_1_808
Type: CAZyme
Location: 791803 - 792738 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
TANB77
→
Family
CAG-508
→
Genus
CAG-452
→
Species
CAG-452 sp000434035

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3517_1_807 vegetarian > omnivore 3.10853 0.03476

🧭 Explore Read Mapping of CGC

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